ZFIN ID: ZDB-GENE-980526-290

Gene Name:homeo box B1b
Gene Symbol: hoxb1b

Previous Names: hoxa1, Hoxa-1, cb249(1) , id:ibd5001(1)
Keywords and Sequence Similarities: homeo box (1)
Nomenclature History

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GENE EXPRESSION:(current status)

All expression data:	38 figure(s) from 29 publications
Directly submitted expression data:	2 figure(s) (2 images) from Kudoh et al., 2001 [ibd5001]
	6 figure(s) (16 images) from Thisse et al., 2001 [cb249]
Wild Type Stages, Structures:	Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Long-pec (48.00h-60.00h)
	central nervous system, germ ring ... (all 19)
Curated microarray expression:	GEO  (1)

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MUTANTS AND TARGETED KNOCKDOWNS:

Mutant line(s):   3 genotypes
Allele(s):   fh095, fh286, unrec_hoxb1b

Phenotype: (current status)

Knockdown reagents: MO1-hoxb1b (1) ,   MO2-hoxb1b (1)

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GENE PRODUCTS:

Gene Ontology

Ontology	GO Term
Biological Process	hindbrain development (more)
Cellular Component	nucleus
Molecular Function	DNA binding (more)

All GO Terms (10)

Protein Families, Domains and Sites:

InterPro:IPR001356 (1) InterPro:IPR009057 (1) InterPro:IPR012287 (1) InterPro:IPR017970 (1) InterPro:IPR020479 (1)

PROSITE:PS00027 (1) PROSITE:PS00032 (1) PROSITE:PS50071 (1)

Pfam:PF00046 (1)

Gene Product Description

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SEGMENT (CLONE AND PROBE) RELATIONSHIPS:

hoxb1b Contained in	[BAC] DKEY-11C5 (1)    (order this) [PAC] BUSM1-227H09 (2)    (order this)
hoxb1b Encodes	[EST] cb249 (1)    (order this) , ibd5001 (1)    (order this) [cDNA] MGC:162122 (1)    (order this)

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SEQUENCE INFORMATION:

Type	Accession #	Length (bp/aa)	Analysis
RNA	RefSeq:NM_131142 (1)	1628 bp	- Select Tool - ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:BX001014 (1)	193523 bp	- Select Tool - MegaBLAST Ensembl
Polypeptide	UniProtKB:A3KNJ6 (1)	307 aa	- Select Tool - ZFIN BLAST Ensembl SIB BLAST
Sequence Clusters	UniGene:117296 (1)
All Sequence Information (17)

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OTHER  hoxb1b  GENE / MARKER PAGES:

Entrez Gene:30374 (1)

VEGA:OTTDARG00000001682 (1) VEGA:OTTDARG00000020590 (1)

Ensembl(Zv8):ENSDARG00000054033 (1)

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MAPPING INFORMATION:

LG:  12  Details

View Map: Merged  Individual Panels

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ORTHOLOGY:

				Evidence
Species	Symbol	Chromosome (Position)	Accession #	AA	CL	CE
Zebrafish	hoxb1b	12
Human	HOXB1	17 (q21.3)	OMIM:142968 Entrez Gene:3211
Mouse	Hoxb1	11 (56.08 cM)	MGI:96182 Entrez Gene:15407
Orthology Details

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CITATIONS   (82)