ZFIN ID: ZDB-LAB-030930-1
Kondoh ERATO Lab
PI/Director: Kondoh, Hisato
Co-PI / Senior
Kishimoto, Yasuyuki
Koshida, Sumito
Contact Person: Kondoh, Hisato
Email: j61056@hpc.cmc.osaka-u.ac.jp
URL: http://www.jst.go.jp/erato/project/kyb_P/kyb_P.html
Address: Kondoh Differentiation Signaling Project (ERATO) Japan Science and Technology Corporation 14 Yoshida-Kawaramachi Sakyo-ku Kyoto 606-8305 JAPAN
Country: Japan
Phone: 81-75-771-8282
Fax: 81-75-771-8281
Line Designation: kt

Show all 15 genomic features

Screening and analysis for zebrafish mutants affecting on early embryogenesis.


Iwanami, N., Takeshita, K., Lawir, D.F., Suetake, I., Tajima, S., Sikora, K., Trancoso, I., ÓMeara, C., Siamishi, I., Takahama, Y., Furutani-Seiki, M., Kondoh, H., Yonezawa, Y., Schorpp, M., Boehm, T. (2020) Epigenetic Protection of Vertebrate Lymphoid Progenitor Cells by Dnmt1. iScience. 23:101260
Okamoto, Y., Nishimura, N., Matsuda, K., Ranawakage, D.C., Kamachi, Y., Kondoh, H., Uchikawa, M. (2018) Cooperation of Sall4 and Sox8 transcription factors in the regulation of the chicken Sox3 gene during otic placode development. Development, growth & differentiation. 60(3):133-145
Iwafuchi-Doi, M., Yoshida, Y., Onichtchouk, D., Leichsenring, M., Driever, W., Takemoto, T., Uchikawa, M., Kamachi, Y., and Kondoh, H. (2011) The Pou5f1/Pou3f-dependent but SoxB-independent regulation of conserved enhancer N2 initiates Sox2 expression during epiblast to neural plate stages in vertebrates. Developmental Biology. 352(2):354-366
Sato, A., Koshida, S., and Takeda, H. (2010) Single-cell analysis of somatotopic map formation in the zebrafish lateral line system. Developmental Dynamics : an official publication of the American Association of Anatomists. 239(7):2058-2065
Seo, J., Asaoka, Y., Nagai, Y., Hirayama, J., Yamasaki, T., Namae, M., Ohata, S., Shimizu, N., Negishi, T., Kitagawa, D., Kondoh, H., Furutani-Seiki, M., Penninger, J.M., Katada, T., and Nishina, H. (2010) Negative regulation of wnt11 expression by Jnk signaling during zebrafish gastrulation. Journal of cellular biochemistry. 110(4):1022-1037
Okuda, Y., Ogura, E., Kondoh, H., and Kamachi, Y. (2010) B1 SOX coordinate cell specification with patterning and morphogenesis in the early zebrafish embryo. PLoS Genetics. 6:e1000936
Negishi, T., Nagai, Y., Asaoka, Y., Ohno, M., Namae, M., Mitani, H., Sasaki, T., Shimizu, N., Terai, S., Sakaida, I., Kondoh, H., Katada, T., Furutani-Seiki, M., and Nishina, H. (2010) Retinoic acid signaling positively regulates liver specification by inducing wnt2bb gene expression in medaka. Hepatology (Baltimore, Md.). 51(3):1037-1045
Ogura, E., Okuda, Y., Kondoh, H., and Kamachi, Y. (2009) Adaptation of GAL4 activators for GAL4 enhancer trapping in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 238(3):641-655
Iwanami, N., Higuchi, T., Sasano, Y., Fujiwara, T., Hoa, V.Q., Okada, M., Talukder, S.R., Kunimatsu, S., Li, J., Saito, F., Bhattacharya, C., Matin, A., Sasaki, T., Shimizu, N., Mitani, H., Himmelbauer, H., Momoi, A., Kondoh, H., Furutani-Seiki, M., and Takahama, Y. (2008) WDR55 Is a Nucleolar Modulator of Ribosomal RNA Synthesis, Cell Cycle Progression, and Teleost Organ Development. PLoS Genetics. 4(8):e1000171
Kawamura, A., Koshida, S., and Takada, S. (2008) Activator-to-repressor conversion of T-box transcription factors by the Ripply family of Groucho/TLE-associated mediators. Molecular and cellular biology. 28(10):3236-3244
Asakawa, K., Suster, M.L., Mizusawa, K., Nagayoshi, S., Kotani, T., Urasaki, A., Kishimoto, Y., Hibi, M., and Kawakami, K. (2008) Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 105(4):1255-1260
Kamachi, Y., Okuda, Y., and Kondoh, H. (2008) Quantitative assessment of the knockdown efficiency of morpholino antisense oligonucleotides in zebrafish embryos using a luciferase assay. Genesis (New York, N.Y. : 2000). 46(1):1-7
Akanuma, T., Koshida, S., Kawamura, A., Kishimoto, Y., and Takada, S. (2007) Paf1 complex homologues are required for Notch-regulated transcription during somite segmentation. EMBO reports. 8(9):858-863
Sasaki, T., Shimizu, A., Ishikawa, S.K., Imai, S., Asakawa, S., Murayama, Y., Khorasani, M.Z., Mitani, H., Furutani-Seiki, M., Kondoh, H., Nanda, I., Schmid, M., Schartl, M., Nonaka, M., Takeda, H., Hori, H., Himmelbauer, H., Shima, A., and Shimizu, N. (2007) The DNA sequence of medaka chromosome LG22. Genomics. 89(1):124-133
Okuda, Y., Yoda, H., Uchikawa, M., Furutani-Seiki, M., Takeda, H., Kondoh, H., Kamachi, Y. (2006) Comparative genomic and expression analysis of group B1 sox genes in zebrafish indicates their diversification during vertebrate evolution. Developmental Dynamics : an official publication of the American Association of Anatomists. 235(3):811-825
Kawamura, A., Koshida, S., Hijikata, H., Ohbayashi, A., Kondoh, H., and Takada, S. (2005) Groucho-associated transcriptional repressor ripply1 is required for proper transition from the presomitic mesoderm to somites. Developmental Cell. 9(6):735-744
Sawada, A., Nishizaki, Y., Sato, H., Yada, Y., Nakayama, R., Yamamoto, S., Nishioka, N., Kondoh, H., and Sasaki, H. (2005) Tead proteins activate the Foxa2 enhancer in the node in cooperation with a second factor. Development (Cambridge, England). 132(21):4719-4729
Kawamura, A., Koshida, S., Hijikata, H., Sakaguchi, T., Kondoh, H., and Takada, S. (2005) Zebrafish Hairy/Enhancer of split protein links FGF signaling to cyclic gene expression in the periodic segmentation of somites. Genes & Development. 19(10):1156-1161
Koshida, S., Kishimoto, Y., Ustumi, H., Shimizu, T., Furutani-Seiki, M., Kondoh, H., and Takada, S. (2005) Integrinalpha5-Dependent Fibronectin Accumulation for Maintenance of Somite Boundaries in Zebrafish Embryos. Developmental Cell. 8(4):587-598
Henrich, T., Ramialison, M., Segerdell, E., Westerfield, M., Furutani-Seiki, M., Wittbrodt, J., Kondoh, H. (2004) GSD: a genetic screen database. Mechanisms of Development. 121(7-8):959-963
Kelsh, R.N., Inoue, C., Momoi, A., Kondoh, H., Furutani-Seiki, M., Ozato, K., and Wakamatsu, Y. (2004) The Tomita collection of medaka pigmentation mutants as a resource for understanding neural crest cell development. Mechanisms of Development. 121(7-8):841-859
Kishimoto, Y., Koshida, S., Furutani-Seiki, M., and Kondoh, H. (2004) Zebrafish maternal-effect mutations causing cytokinesis defect without affecting mitosis or equatorial vasa deposition. Mechanisms of Development. 121(1):79-89
Momoi, A., Yoda, H., Steinbeisser, H., Fagotto, F., Kondoh, H., Kudo, A., Driever, W., and Furutani-Seiki, M. (2003) Analysis of Wnt8 for neural posteriorizing factor by identifying Frizzled 8c and Frizzled 9 as functional receptors for Wnt8. Mechanisms of Development. 120(4):477-489
Yoda, H., Momoi, A., Esguerra, C.V., Meyer, D., Driever, W., Kondoh, H., and Furutani-Seiki, M. (2003) An expression pattern screen for genes involved in the induction of the posterior nervous system of zebrafish. Differentiation; research in biological diversity. 71(2):152-162
Tonou-Fujimori, N., Takahashi, M., Onodera, H., Kikuta, H., Koshida, S., Takeda, H., and Yamasu, K. (2002) RETRACTED: Expression of the FGF receptor 2 gene (fgfr2) during embryogenesis in the zebrafish Danio rerio. Gene expression patterns : GEP. 2(3-4):183-188
Tonou-Fujimori, N., Takahashi, M., Onodera, H., Kikuta, H., Koshida, S., Takeda, H., and Yamasu, K. (2002) Expression of the FGF receptor 2 gene (fgfr2) during embryogenesis in the zebrafish Danio rerio. Mechanisms of Development. (Suppl.) 119:S173-S178
Koshida, S., Shinya, M., Nikaido, M., Ueno, N., Schulte-Merker, S., Kuroiwa, A., and Takeda, H. (2002) Inhibition of BMP activity by the FGF signal promotes posterior neural development in zebrafish. Developmental Biology. 244(1):9-20
Shinya, M., Koshida, S., Sawada, A., Kuroiwa, A., and Takeda, H. (2001) Fgf signalling through MAPK cascade is required for development of the subpallial telencephalon in zebrafish embryos. Development (Cambridge, England). 128(21):4153-4164
Goutel, C., Kishimoto, Y., Schulte-Merker, S., and Rosa, F. (2000) The ventralizing activity of Radar, a maternally expressed bone morphogenetic protein, reveals complex bone morphogenetic protein interactions controlling dorso-ventral patterning in zebrafish. Mechanisms of Development. 99(1-2):15-27
Kondoh, H., Uchikawa, M., Yoda, H., Takeda, H., Furutani-Seiki, M., and Karlstrom, R.O. (2000) Zebrafish mutations in Gli-mediated hedgehog signaling lead to lens transdifferentiation from the adenohypophysis anlage. Mechanisms of Development. 96(2):165-174
Barth, K.A., Kishimoto, Y., Rohr, K.B., Seydler, C., Schulte-Merker, S., and Wilson, S.W. (1999) Bmp activity establishes a gradient of positional information throughout the entire neural plate. Development (Cambridge, England). 126(22):4977-4987
Meno, C., Gritsman, K., Ohishi, S., Ohfuji, Y., Heckscher, E., Mochida, K., Shimono, A., Kondoh, H., Talbot, W.S., Robertson, E.J., Schier, A.F., and Hamada, H. (1999) Mouse lefty2 and zebrafish antivin are feedback inhibitors of nodal signaling during vertebrate gastrulation. Molecular Cell. 4(3):287-298
Rodaway, A., Takeda, H., Koshida, S., Broadbent, J., Price, B., Smith, J.C., Patient, R., and Holder, N. (1999) Induction of the mesendoderm in the zebrafish germ ring by yolk cell-derived TGF-ß; family signals and discrimination of mesoderm and endoderm by FGF. Development (Cambridge, England). 126(14):3067-3078
Koshida, S., Shinya, M., Mizuno, T., Kuroiwa, A., and Takeda, H. (1998) Initial anteroposterior pattern of the zebrafish central nervous system is determined by differential competence of the epiblast. Development (Cambridge, England). 125:1957-1966
Makita, R., Mizuno, T., Koshida, S., Kuroiwa, A., and Takeda, H. (1998) Zebrafish wnt11: pattern and regulation of the expression by the yolk cell and no tail activity. Mechanisms of Development. 71:165-176
Lee, K.H., Marden, J.J., Thompson, M.S., MacLennan, H., Kishimoto, Y., Pratt, S.J., Schulte-Merker, S., Hammerschmidt, M., Johnson, S.L., Postlethwait, J.H., Beier, D.C., and Zon, L.I. (1998) Cloning and genetic mapping of zebrafish BMP-2. Developmental genetics. 23:97-103
Kishimoto, Y., Lee, K.H., Zon, L., Hammerschmidt, M., and Schulte-Merker, S. (1997) The molecular nature of zebrafish swirl: BMP2 function is essential during early dorsoventral patterning. Development (Cambridge, England). 124:4457-4466