Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-030115-1
Gene Name: glyceraldehyde-3-phosphate dehydrogenase
Gene Symbol: gapdh
Previous Names: gapd (1), bb02e05, cb609 (1), mg:bb02e05, wu:fb33a10, wu:ft80f05
Location: Chr: 16   Details
Nomenclature History
GENE EXPRESSION
All Expression Data: 31 figures from 19 publications
Directly Submitted Expression Data: 6 figures (28 images) from Thisse et al., 2001 [cb609]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
  brain, eye, gill, gut (all 23) expand
Curated Microarray Expression: GEO (1)
MUTANTS AND TARGETED KNOCKDOWNS No data available
PHENOTYPE No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process microtubule cytoskeleton organization (more)
Cellular Component cytosol (more)
Molecular Function glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity (more)
GO Terms (all 21)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR006424 (1)
  • InterPro:IPR016040 (1)
  • InterPro:IPR020828 (1)
  • InterPro:IPR020829 (1)
  • InterPro:IPR020830 (1)
  • InterPro:IPR020831 (1)
  • PROSITE:PS00071 (1)
  • Pfam:PF00044 (1)
  • Pfam:PF02800 (1)
  • EC:1.2.1.12 (1)
  • EC:2.6.99.- (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA gapdh-001 (1) 1331
    gapdh-002 (1) 902
    gapdh-003 (1) 445
    gapdh-004 (1) 825
    ncRNA gapdh-005 (1) 834
    GENE PRODUCT DESCRIPTION
    ANTIBODIES
    Ab1-gapdh (1), Ab6-gapdh (1)
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM gapdh No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    gapdh Contained in: [BAC] DKEY-260G12 (1)
    gapdh Encodes: [EST] bb02e05, cb609 (1) (order this), fb33a10 (1), ft80f05
    [cDNA] MGC:86789 (1) (order this), MGC:110724 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001115114 (1) 1329 bp
    Genomic GenBank:CU861451 (1) 120950 bp
    Select Tool
    Polypeptide UniProtKB:Q5XJ10 (1) 333 aa
    Sequence Clusters UniGene:35640 (1)
    Sequence Information (all 25)
    OTHER gapdh GENE PAGES
  • Gene:317743 (1)
  • VEGA:OTTDARG00000032973 (1)
  • Ensembl(Zv9):ENSDARG00000043457 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA CL
    Zebrafish gapdh 16  
    Human GAPDH 12 (12p13)
  • OMIM:138400
  • Gene:2597
  • Mouse Gapdh 6 ( 59.32 cM)
  • MGI:95640
  • Gene:14433
  • Orthology Details
    CITATIONS (121)