ZFIN Publication List

ZFIN ID: ZDB-ATB-081107-1

CITATIONS (136 total)

Antibody Name: Ab1-casp3

Abdul-Wajid, S., Demarest, B.L., Yost, H.J. (2018) Loss of embryonic neural crest derived cardiomyocytes causes adult onset hypertrophic cardiomyopathy in zebrafish. Nature communications. 9:4603

Akieda, Y., Ogamino, S., Furuie, H., Ishitani, S., Akiyoshi, R., Nogami, J., Masuda, T., Shimizu, N., Ohkawa, Y., Ishitani, T. (2019) Cell competition corrects noisy Wnt morphogen gradients to achieve robust patterning in the zebrafish embryo. Nature communications. 10:4710

Alyenbaawi, H., Kanyo, R., Locskai, L.F., Kamali-Jamil, R., DuVal, M.G., Bai, Q., Wille, H., Burton, E.A., Allison, W.T. (2021) Seizures are a druggable mechanistic link between TBI and subsequent tauopathy. eLIFE. 10:

Anderson, N.M., Qin, X., Finan, J.M., Lam, A., Athoe, J., Missiaen, R., Skuli, N., Kennedy, A., Saini, A.S., Tao, T., Zhu, S., Nissim, I., Look, A.T., Qing, G., Simon, M.C., Feng, H. (2021) Metabolic Enzyme DLST Promotes Tumor Aggression and Reveals a Vulnerability to OXPHOS Inhibition in High-Risk Neuroblastoma. Cancer research. 81(17):4417-4430

Ando, H., Sato, T., Ito, T., Yamamoto, J., Sakamoto, S., Nitta, N., Asatsuma-Okumura, T., Shimizu, N., Mizushima, R., Aoki, I., Imai, T., Yamaguchi, Y., Berk, A.J., Handa, H. (2019) Cereblon Control of Zebrafish Brain Size by Regulation of Neural Stem Cell Proliferation. iScience. 15:95-108

Andrews, N., Ramel, M.C., Kumar, S., Alexandrov, Y., Kelly, D.J., Warren, S.C., Kerry, L., Lockwood, N., Frolov, A., Frankel, P., Bugeon, L., McGinty, J., Dallman, M.J., French, P.M. (2016) Visualising apoptosis in live zebrafish using fluorescence lifetime imaging with optical projection tomography to map FRET biosensor activity in space and time. Journal of biophotonics. 9(4):414-24

Andrzejczuk, L.A., Banerjee, S., England, S.J., Voufo, C., Kamara, K., Lewis, K.E. (2018) Tal1, Gata2a, and Gata3 Have Distinct Functions in the Development of V2b and Cerebrospinal Fluid-Contacting KA Spinal Neurons. Frontiers in neuroscience. 12:170

Anton, K.A., Kajita, M., Narumi, R., Fujita, Y., Tada, M. (2018) Src-transformed cells hijack mitosis to extrude from the epithelium. Nature communications. 9:4695

Asatsuma-Okumura, T., Ando, H., De Simone, M., Yamamoto, J., Sato, T., Shimizu, N., Asakawa, K., Yamaguchi, Y., Ito, T., Guerrini, L., Handa, H. (2019) p63 is a cereblon substrate involved in thalidomide teratogenicity. Nature Chemical Biology. 15(11):1077-1084

Atieh, Y., Wyatt, T., Zaske, A.M., Eisenhoffer, G.T. (2020) Pulsatile contractions promote apoptotic cell extrusion in epithelial tissues. Current biology : CB. 31(6):1129-1140.e4

Babu, S., Takeuchi, Y., Masai, I. (2022) Banp regulates DNA damage response and chromosome segregation during the cell cycle in zebrafish retina. eLIFE. 11

Balci, T.B., Prykhozhij, S.V., Teh, E.M., Da'as, S.I., McBride, E., Liwski, R., Chute, I.C., Leger, D., Lewis, S.M., Berman, J.N. (2014) A transgenic zebrafish model expressing KIT-D816V recapitulates features of aggressive systemic mastocytosis. British journal of haematology. 167(1):48-61

Barreiro-Iglesias, A., Mysiak, K.S., Scott, A.L., Reimer, M.M., Yang, Y., Becker, C.G., Becker, T. (2015) Serotonin Promotes Development and Regeneration of Spinal Motor Neurons in Zebrafish. Cell Reports. 13:924-932

Bekri, A., Drapeau, P. (2018) Glycine Promotes the Survival of a Subpopulation of Neural Stem Cells. Frontiers in cell and developmental biology. 6:68

Blackwell, D.L., Fraser, S.D., Caluseriu, O., Vivori, C., Tyndall, A.V., Lamont, R.E., Parboosingh, J.S., Innes, A.M., Bernier, F.P., Childs, S.J. (2022) Hnrnpul1 controls transcription, splicing, and modulates skeletal and limb development in vivo. G3 (Bethesda). 12(5):

Brock, C.K., Wallin, S.T., Ruiz, O.E., Samms, K.M., Mandal, A., Sumner, E.A., Eisenhoffer, G.T. (2019) Stem cell proliferation is induced by apoptotic bodies from dying cells during epithelial tissue maintenance. Nature communications. 10:1044

Brockway, N.L., Cook, Z.T., O'Gallagher, M., Tobias, Z.J.C., Gedi, M., Carey, K.M., Unni, V.K., Pan, Y.A., Metz, M.R., Weissman, T.A. (2019) Multicolor lineage tracing using in vivo time-lapse imaging reveals coordinated death of clonally related cells in the developing vertebrate brain. Developmental Biology. 453(2):130-140

Brunal, A.A., Clark, K.C., Ma, M., Woods, I.G., Pan, Y.A. (2021) Effects of Constitutive and Acute Connexin 36 Deficiency on Brain-Wide Susceptibility to PTZ-Induced Neuronal Hyperactivity. Frontiers in molecular neuroscience. 13:587978

Bryan, C.D., Chien, C.B., Kwan, K.M. (2016) Loss of laminin alpha 1 results in multiple structural defects and divergent effects on adhesion during vertebrate optic cup morphogenesis. Developmental Biology. 416(2):324-37

Casey, M.A., Hill, J.T., Hoshijima, K., Bryan, C.D., Gribble, S.L., Brown, J.T., Chien, C.B., Yost, H.J., Kwan, K.M. (2021) Shutdown corner, a large deletion mutant isolated from a haploid mutagenesis screen in zebrafish. G3 (Bethesda). 12(3):

Casey, M.J., Call, A.M., Thorpe, A.V., Jette, C.A., Engel, M.E., Stewart, R.A. (2022) The scaffolding function of LSD1/KDM1A reinforces a negative feedback loop to repress stem cell gene expression during primitive hematopoiesis. iScience. 26:105737105737

Cau, E., Quillien, A., and Blader, P. (2008) Notch resolves mixed neural identities in the zebrafish epiphysis. Development (Cambridge, England). 135(14):2391-2401

Chambers, B.E., Gerlach, G.F., Clark, E.G., Chen, K.H., Levesque, A.E., Leshchiner, I., Goessling, W., Wingert, R.A. (2019) Tfap2a is a novel gatekeeper of nephron differentiation during kidney development. Development (Cambridge, England). 146(13):

Chambers, J.M., Poureetezadi, S.J., Addiego, A., Lahne, M., Wingert, R.A. (2018) ppargc1a controls nephron segmentation during zebrafish embryonic kidney ontogeny. eLIFE. 7:

Chen, C.F., Chu, C.Y., Chen, T.H., Lee, S.J., Shen, C.N., and Hsiao, C.D. (2011) Establishment of a transgenic zebrafish line for superficial skin ablation and functional validation of apoptosis modulators in vivo. PLoS One. 6(5):e20654

Chen, K., Li, X., Song, G., Zhou, T., Long, Y., Li, Q., Zhong, S., Cui, Z. (2019) Deficiency in the membrane protein Tmbim3a/Grinaa initiates cold-induced ER stress and cell death by activating an intrinsic apoptotic pathway in zebrafish. The Journal of biological chemistry. 294(30):11445-11457

Chen, S., Zhang, H., Wang, F., Zhang, W., Peng, G. (2016) nr0b1 (DAX1) mutation in zebrafish causes female-to-male sex reversal through abnormal gonadal proliferation and differentiation. Molecular and Cellular Endocrinology. 433:105-16

Chetty, S.C., Rost, M.S., Enriquez, J.R., Schumacher, J.A., Baltrunaite, K., Rossi, A., Stainier, D.Y., Sumanas, S. (2017) Vegf Signaling Promotes Vascular Endothelial Differentiation by Modulating etv2 Expression. Developmental Biology. 424(2):147-161

Chetty, S.C., Sumanas, S. (2020) Ets1 functions partially redundantly with Etv2 to promote embryonic vasculogenesis and angiogenesis in zebrafish. Developmental Biology. 465(1):11-22

Craig, M.P., Grajevskaja, V., Liao, H.K., Balciuniene, J., Ekker, S.C., Park, J.S., Essner, J.J., Balciunas, D., Sumanas, S. (2015) Etv2 and Fli1b Function Together as Key Regulators of Vasculogenesis and Angiogenesis. Arterioscler. Thromb. Vasc. Biol.. 35(4):865-76

Dietrich, A.C., Lombardo, V.A., Abdelilah-Seyfried, S. (2014) Blood Flow and Bmp Signaling Control Endocardial Chamber Morphogenesis. Developmental Cell. 30:367-377

Dona, M., Slijkerman, R., Lerner, K., Broekman, S., Wegner, J., Howat, T., Peters, T., Hetterschijt, L., Boon, N., de Vrieze, E., Sorusch, N., Wolfrum, U., Kremer, H., Neuhauss, S., Zang, J., Kamermans, M., Westerfield, M., Phillips, J., van Wijk, E. (2018) Usherin defects lead to early-onset retinal dysfunction in zebrafish. Experimental Eye Research. 173:148-159

Eimon, P.M., Kratz, E., Varfolomeev, E., Hymowitz, S.G., Stern, H., Zha, J., and Ashkenazi, A. (2006) Delineation of the cell-extrinsic apoptosis pathway in the zebrafish. Cell death and differentiation. 13(10):1619-1630

Eisenhoffer, G.T., Loftus, P.D., Yoshigi, M., Otsuna, H., Chien, C.B., Morcos, P.A., and Rosenblatt, J. (2012) Crowding induces live cell extrusion to maintain homeostatic cell numbers in epithelia. Nature. 484(7395):546-549

Eisenhoffer, G.T., Slattum, G., Ruiz, O.E., Otsuna, H., Bryan, C.D., Lopez, J., Wagner, D.S., Bonkowsky, J.L., Chien, C.B., Dorsky, R.I., Rosenblatt, J. (2017) A toolbox to study epidermal cell types in zebrafish. Journal of Cell Science. 130(1):269-277

Esser, J.S., Charlet, A., Schmidt, M., Heck, S., Allen, A., Lother, A., Epting, D., Patterson, C., Bode, C., Moser, M. (2017) The neuronal transcription factor NPAS4 is a strong inducer of sprouting angiogenesis and tip cell formation. Cardiovascular research. 113(2):222-223

Fadul, J., Zulueta-Coarasa, T., Slattum, G.M., Redd, N.M., Jin, M.F., Redd, M.J., Daetwyler, S., Hedeen, D., Huisken, J., Rosenblatt, J. (2021) KRas-transformed epithelia cells invade and partially dedifferentiate by basal cell extrusion. Nature communications. 12:7180

Forrester, A.M., Grabher, C., McBride, E.R., Boyd, E.R., Vigerstad, M.H., Edgar, A., Kai, F.B., Da'as, S.I., Payne, E., Look, A.T., and Berman, J.N. (2011) NUP98-HOXA9-transgenic zebrafish develop a myeloproliferative neoplasm and provide new insight into mechanisms of myeloid leukaemogenesis. British journal of haematology. 155(2):167-81

Fox, S.C., Widen, S.A., Asai-Coakwell, M., Havrylov, S., Benson, M., Prichard, L.B., Baddam, P., Graf, D., Lehmann, O.J., Waskiewicz, A.J. (2022) BMP3 is a novel locus involved in the causality of ocular coloboma. Human genetics. 141(8):1385-1407

French, C.R., Stach, T.R., March, L.D., Lehmann, O.J., and Waskiewicz, A.J. (2013) Apoptotic and proliferative defects characterize ocular development in a microphthalmic BMP model. Investigative ophthalmology & visual science. 54(7):4636-4647

Fu, J., Nagashima, M., Guo, C., Raymond, P.A., Wei, X. (2018) Novel Animal Model of Crumbs-Dependent Progressive Retinal Degeneration That Targets Specific Cone Subtypes. Investigative ophthalmology & visual science. 59:505-518

Glasco, D.M., Wang, Z., Kang, S., Funkhouser, A.T. (2022) Acetaminophen Disrupts the Development of Pharyngeal Arch-Derived Cartilage and Muscle in Zebrafish. Journal of developmental biology. 10(3):

Haraoka, Y., Akieda, Y., Nagai, Y., Mogi, C., Ishitani, T. (2022) Zebrafish imaging reveals TP53 mutation switching oncogene-induced senescence from suppressor to driver in primary tumorigenesis. Nature communications. 13:1417

Herzog, C., Pons Garcia, L., Keatinge, M., Greenald, D., Moritz, C., Peri, F., Herrgen, L. (2019) Rapid clearance of cellular debris by microglia limits secondary neuronal cell death after brain injury in vivo. Development (Cambridge, England). 146(9):

Hoshijima, K., Jurynec, M.J., Klatt Shaw, D., Jacobi, A.M., Behlke, M.A., Grunwald, D.J. (2019) Highly Efficient CRISPR-Cas9-Based Methods for Generating Deletion Mutations and F0 Embryos that Lack Gene Function in Zebrafish. Developmental Cell. 51(5):645-657.e4

Houseright, R.A., Miskolci, V., Mulvaney, O., Bortnov, V., Mosher, D.F., Rindy, J., Bennin, D.A., Huttenlocher, A. (2021) Myeloid-derived growth factor regulates neutrophil motility in interstitial tissue damage. The Journal of cell biology. 220(8):

Howard, A.G.A., Nguyen, A.C., Tworig, J., Ravisankar, P., Singleton, E.W., Li, C., Kotzur, G., Waxman, J.S., Uribe, R.A. (2022) Elevated Hoxb5b Expands Vagal Neural Crest Pool and Blocks Enteric Neuronal Development in Zebrafish. Frontiers in cell and developmental biology. 9:803370

Hsu, C.H., Liou, G.G., Jiang, Y.J. (2019) Nicastrin Deficiency Induces Tyrosinase-dependent Depigmentation and Skin Inflammation. The Journal of investigative dermatology. 140(2):404-414.e13

Jette, C.A., Flanagan, A.M., Ryan, J., Pyati, U.J., Carbonneau, S., Stewart, R.A., Langenau, D.M., Look, A.T., and Letai, A. (2008) BIM and other BCL-2 family proteins exhibit cross-species conservation of function between zebrafish and mammals. Cell death and differentiation. 15(6):1063-1072

Jusuf, P.R., Almeida, A.D., Randlett, O., Joubin, K., Poggi, L., and Harris, W.A. (2011) Origin and determination of inhibitory cell lineages in the vertebrate retina. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31(7):2549-2562

Juárez-Morales, J.L., Weierud, F., England, S.J., Demby, C., Santos, N., Grieb, G., Mazan, S., Lewis, K.E. (2021) Evolution of lbx spinal cord expression and function. Evolution & development. 23(5):404-422

Kamei, H., Yoneyama, Y., Hakuno, F., Sawada, R., Shimizu, T., Duan, C., Takahashi, S.I. (2018) Catch-up growth in zebrafish embryo requires neural crest cells sustained by Irs1-signaling. Endocrinology. 159(4):1547-1560

Kapsimali, M., Kaushik, A.L., Gibon, G., Dirian, L., Ernest, S., and Rosa, F.M. (2011) Fgf signaling controls pharyngeal taste bud formation through miR-200 and Delta-Notch activity. Development (Cambridge, England). 138(16):3473-3484

Kratz, E., Eimon, P.M., Mukhyala, K., Stern, H., Zha, J., Strasser, A., Hart, R., and Ashkenazi A. (2006) Functional characterization of the Bcl-2 gene family in the zebrafish. Cell death and differentiation. 13(10):1631-1640

Kraus, J.M., Giovannone, D., Rydzik, R., Balsbaugh, J.L., Moss, I.L., Schwedler, J.L., Bertrand, J.Y., Traver, D., Hankenson, K.D., Crump, J.G., Youngstrom, D.W. (2022) Notch signaling enhances bone regeneration in the zebrafish mandible. Development (Cambridge, England). 149(5)

Kroeger, P.T., Drummond, B.E., Miceli, R., McKernan, M., Gerlach, G.F., Marra, A.N., Fox, A., McCampbell, K.K., Leshchiner, I., Rodriguez-Mari, A., BreMiller, R., Thummel, R., Davidson, A.J., Postlethwait, J., Goessling, W., Wingert, R.A. (2017) The zebrafish kidney mutant zeppelin reveals that brca2/fancd1 is essential for pronephros development. Developmental Biology. 428(1):148-163

Lee, S., Koh, W., Kim, H.T., Kim, C.H., and Lee, S. (2010) Cancer-upregulated gene 2 (CUG2) overexpression induces apoptosis in SKOV-3 cells. Cell biochemistry and function. 28(6):461-468

Li, Y., Agrawal, I., Gong, Z. (2019) Reversion of tumor hepatocytes to normal hepatocytes during liver tumor regression in an oncogene transgenic zebrafish model. Disease models & mechanisms. 12(10):

Liu, F., Kambakam, S., Almeida, M.P., Ming, Z., Welker, J.M., Wierson, W.A., Schultz-Rogers, L.E., Ekker, S.C., Clark, K.J., Essner, J.J., McGrail, M. (2022) Cre/lox regulated conditional rescue and inactivation with zebrafish UFlip alleles generated by CRISPR-Cas9 targeted integration. eLIFE. 11:

Lodh, S., Hostelley, T.L., Leitch, C.C., O'Hare, E.A., Zaghloul, N.A. (2016) Differential effects on β-cell mass by disruption of Bardet-Biedl Syndrome or Alstrom Syndrome genes. Human molecular genetics. 25(1):57-68

Lohani, S., Funato, Y., Akieda, Y., Mizutani, K., Takai, Y., Ishitani, T., Miki, H. (2021) A novel role of PRL in regulating epithelial cell density by inducing apoptosis at confluence. Journal of Cell Science. 135(2):

Lu, J.W., Liao, C.Y., Yang, W.Y., Lin, Y.M., Jin, S.L., Wang, H.D., and Yuh, C.H. (2014) Overexpression of endothelin 1 triggers hepatocarcinogenesis in zebrafish and promotes cell proliferation and migration through the AKT pathway. PLoS One. 9(1):e85318

Lu, J.W., Lin, L.I., Sun, Y., Liu, D., Gong, Z. (2022) Effect of Lipopolysaccharides on Liver Tumor Metastasis of twist1a/kras^V12 Double Transgenic Zebrafish. Biomedicines. 10(1):

Lu, J.W., Raghuram, D., Fong, P.A., Gong, Z. (2018) Inducible Intestine-Specific Expression of kras^V12 Triggers Intestinal Tumorigenesis In Transgenic Zebrafish.. Neoplasia (New York, N.Y.). 20:1187-1197

Lu, J.W., Sun, Y., Lin, L.I., Liu, D., Gong, Z. (2021) Exacerbation of Liver Tumor Metastasis in twist1a+/xmrk+ Double Transgenic Zebrafish following Lipopolysaccharide or Dextran Sulphate Sodium Exposure. Pharmaceuticals (Basel, Switzerland). 14(9):

Lusk, S., Kwan, K.M. (2021) Pax2a, but not pax2b, influences cell survival and periocular mesenchyme localization to facilitate zebrafish optic fissure closure. Developmental Dynamics : an official publication of the American Association of Anatomists. 251(4):625-644

Ma, M., Brunal, A.A., Clark, K.C., Studtmann, C., Stebbins, K., Higashijima, S.I., Pan, Y.A. (2023) Deficiency in the cell-adhesion molecule dscaml1 impairs hypothalamic CRH neuron development and perturbs normal neuroendocrine stress axis function. Frontiers in cell and developmental biology. 11:11136751113675

Male, I., Ozacar, A.T., Fagan, R.R., Loring, M.D., Loring, M.D., Shen, M.C., Pace, V.A., Devine, C.A., Lawson, G.E., Lutservitz, A., Karlstrom, R.O. (2020) Hedgehog signaling regulates neurogenesis in the larval and adult zebrafish hypothalamus. eNeuro. 7(6):

Malhab, L.J., Descamps, S., Delaval, B., Xirodimas, D.P. (2016) The use of the NEDD8 inhibitor MLN4924 (Pevonedistat) in a cyclotherapy approach to protect wild-type p53 cells from MLN4924 induced toxicity. Scientific Reports. 6:37775

Martínez-Morcillo, F.J., Cantón-Sandoval, J., Martínez-Navarro, F.J., Cabas, I., Martínez-Vicente, I., Armistead, J., Hatzold, J., López-Muñoz, A., Martínez-Menchón, T., Corbalán-Vélez, R., Lacal, J., Hammerschmidt, M., García-Borrón, J.C., García-Ayala, A., Cayuela, M.L., Pérez-Oliva, A.B., García-Moreno, D., Mulero, V. (2021) NAMPT-derived NAD+ fuels PARP1 to promote skin inflammation through parthanatos cell death. PLoS Biology. 19:e3001455

Maurus, D., and Harris, W.A. (2009) Zic-associated holoprosencephaly: zebrafish Zic1 controls midline formation and forebrain patterning by regulating Nodal, Hedgehog, and retinoic acid signaling. Genes & Development. 23(12):1461-1473

Medrano, M.P., Pisera-Fuster, A., Bernabeu, R.O., Faillace, M.P. (2020) P2X7 and A_2A receptor endogenous activation protects against neuronal death caused by CoCl₂ -induced photoreceptor toxicity in the zebrafish retina. The Journal of comparative neurology. 528(12):2000-2020

Monteiro, R., Pouget, C., and Patient, R. (2011) The gata1/pu.1 lineage fate paradigm varies between blood populations and is modulated by tif1γ. The EMBO journal. 30(6):1093-1103

Nandamuri, S.P., Lusk, S., Kwan, K.M. (2022) Loss of zebrafish dzip1 results in inappropriate recruitment of periocular mesenchyme to the optic fissure and ocular coloboma. PLoS One. 17:e0265327

Narumi, R., Liu, S., Ikeda, N., Morita, O., Tasaki, J. (2020) Chemical-Induced Cleft Palate Is Caused and Rescued by Pharmacological Modulation of the Canonical Wnt Signaling Pathway in a Zebrafish Model. Frontiers in cell and developmental biology. 8:592967

Naylor, R.W., Han, H.I., Hukriede, N.A., Davidson, A.J. (2017) Wnt8a expands the pool of embryonic kidney progenitors in zebrafish. Developmental Biology. 425(2):130-141

Nguyen, N., and Zhu, Y. (2009) Prolactin functions as a survival factor during zebrafish embryogenesis. Comparative biochemistry and physiology. Part A, Molecular & integrative physiology. 153(1):88-93

Noonan, H.R., Metelo, A.M., Kamei, C.N., Peterson, R.T., Drummond, I.A., Iliopoulos, O. (2016) Loss of vhl in the zebrafish pronephros recapitulates early stages of human clear cell renal cell carcinoma. Disease models & mechanisms. 9:873-884

Novorol, C., Burkhardt, J., Wood, K.J., Iqbal, A., Roque, C., Coutts, N., Almeida, A.D., He, J., Wilkinson, C.J., and Harris, W.A. (2013) Microcephaly models in the developing zebrafish retinal neuroepithelium point to an underlying defect in metaphase progression. Open Biology. 3(10):130065

Ogai, K., Kuwana, A., Hisano, S., Nagashima, M., Koriyama, Y., Sugitani, K., Mawatari, K., Nakashima, H., Kato, S. (2014) Upregulation of Leukemia Inhibitory Factor (LIF) during the Early Stage of Optic Nerve Regeneration in Zebrafish. PLoS One. 9:e106010

Othman, N., Nagoor, N.H. (2018) Overexpression of miR‑361‑5p plays an oncogenic role in human lung adenocarcinoma through the regulation of SMAD2. International Journal of Oncology. 54(1):306-314

Othman, N., Nagoor, N.H. (2017) miR-608 regulates apoptosis in human lung adenocarcinoma via regulation of AKT2. International Journal of Oncology. 51(6):1757-1764

Palencia-Desai, S., Rost, M.S., Schumacher, J.A., Ton, Q.V., Craig, M.P., Baltrunaite, K., Koenig, A.L., Wang, J., Poss, K.D., Chi, N.C., Stainier, D.Y., Sumanas, S. (2015) Myocardium and BMP signaling are required for endocardial differentiation. Development (Cambridge, England). 142(13):2304-15

Pant, S.D., March, L.D., Famulski, J.K., French, C.R., Lehmann, O.J., and Waskiewicz, A.J. (2013) Molecular mechanisms regulating ocular apoptosis in zebrafish gdf6a mutants. Investigative ophthalmology & visual science. 54(8):5871-5879

Perl, E., Ravisankar, P., Beerens, M.E., Mulahasanovic, L., Smallwood, K., Sasso, M.B., Wenzel, C., Ryan, T.D., Komár, M., Bove, K.E., MacRae, C.A., Weaver, K.N., Prada, C.E., Waxman, J.S. (2022) Stx4 is required to regulate cardiomyocyte Ca²⁺ handling during vertebrate cardiac development. HGG advances. 3:100115

Phatak, M., Kulkarni, S., Miles, L.B., Anjum, N., Dworkin, S., Sonawane, M. (2021) Grhl3 promotes retention of epidermal cells under endocytic stress to maintain epidermal architecture in zebrafish. PLoS Genetics. 17:e1009823

Popgeorgiev, N., Bonneau, B., Ferri, K.F., Prudent, J., Thibaut, J., and Gillet, G. (2011) The Apoptotic Regulator Nrz Controls Cytoskeletal Dynamics via the Regulation of Ca(2)+ Trafficking in the Zebrafish Blastula. Developmental Cell. 20(5):663-676

Popgeorgiev, N., Prudent, J., Bonneau, B., and Gillet, G. (2011) The yolk cell of the zebrafish blastula harbors functional apoptosis machinery. Communicative & integrative biology. 4(5):549-551

Potts, K.S., Cameron, R.C., Metidji, A., Ghazale, N., Wallace, L., Leal-Cervantes, A.I., Palumbo, R., Barajas, J.M., Gupta, V., Aluri, S., Pradhan, K., Myers, J.A., McKinstry, M., Bai, X., Choudhary, G.S., Shastri, A., Verma, A., Obeng, E.A., Bowman, T.V. (2022) Splicing factor deficits render hematopoietic stem and progenitor cells sensitive to STAT3 inhibition. Cell Reports. 41:111825111825

Prudent, J., Popgeorgiev, N., Bonneau, B., Thibaut, J., Gadet, R., Lopez, J., Gonzalo, P., Rimokh, R., Manon, S., Houart, C., Herbomel, P., Aouacheria, A., and Gillet, G. (2013) Bcl-wav and the mitochondrial calcium uniporter drive gastrula morphogenesis in zebrafish. Nature communications. 4:2330

Pyati, U.J., Gjini, E., Carbonneau, S., Lee, J.S., Guo, F., Jette, C.A., Kelsell, D.P., and Look, A.T. (2011) p63 Mediates an Apoptotic Response to Pharmacological and Disease-Related ER Stress in the Developing Epidermis. Developmental Cell. 21(3):492-505

Ramanoudjame, L., Rocancourt, C., Lainé, J., Klein, A., Joassard, L., Gartioux, C., Fleury, M., Lyphout, L., Kabashi, E., Ciura, S., Cousin, X., Allamand, V. (2015) Two novel COLVI long chains in zebrafish that are essential for muscle development. Human molecular genetics. 24(23):6624-39

Reichert, S., Pavón Arocas, O., Rihel, J. (2019) The Neuropeptide Galanin Is Required for Homeostatic Rebound Sleep following Increased Neuronal Activity. Neuron. 104(2):370-384.e5

Robu, M.E., Zhang, Y., and Rhodes, J. (2012) Rereplication in emi1-Deficient Zebrafish Embryos Occurs through a Cdh1-Mediated Pathway. PLoS One. 7(10):e47658

Rodriguez-Mari, A., Wilson, C., Titus, T.A., Cañestro, C., Bremiller, R.A., Yan, Y.L., Nanda, I., Johnston, A., Kanki, J.P., Gray, E.M., He, X., Spitsbergen, J., Schindler, D., and Postlethwait, J.H. (2011) Roles of brca2 (fancd1) in Oocyte Nuclear Architecture, Gametogenesis, Gonad Tumors, and Genome Stability in Zebrafish. PLoS Genetics. 7(3):e1001357

Rosenbauer, J., Zhang, C., Mattes, B., Reinartz, I., Wedgwood, K., Schindler, S., Sinner, C., Scholpp, S., Schug, A. (2020) Modeling of Wnt-mediated tissue patterning in vertebrate embryogenesis. PLoS Computational Biology. 16:e1007417

Rydeen, A.B., Waxman, J.S. (2016) Cyp26 Enzymes Facilitate Second Heart Field Progenitor Addition and Maintenance of Ventricular Integrity. PLoS Biology. 14:e2000504

Sanek, N.A., and Grinblat, Y. (2008) A novel role for zebrafish zic2a during forebrain development. Developmental Biology. 317(1):325-335

Schultz, L.E., Haltom, J.A., Almeida, M.P., Wierson, W.A., Solin, S.L., Weiss, T.J., Helmer, J.A., Sandquist, E.J., Shive, H.R., McGrail, M. (2018) Epigenetic regulators Rbbp4 and Hdac1 are overexpressed in a zebrafish model of RB1 embryonal brain tumor, and are required for neural progenitor survival and proliferation. Disease models & mechanisms. 11(6)

Schultz-Rogers, L.E., Thayer, M.L., Kambakam, S., Wierson, W.A., Helmer, J.A., Wishman, M.D., Wall, K.A., Greig, J.L., Forsman, J.L., Puchhalapalli, K., Nair, S., Weiss, T.J., Luiken, J.M., Blackburn, P.R., Ekker, S.C., Kool, M., McGrail, M. (2022) Rbbp4 loss disrupts neural progenitor cell cycle regulation independent of Rb and leads to Tp53 acetylation and apoptosis. Developmental Dynamics : an official publication of the American Association of Anatomists. 251(8):1267-1290

Sidi, S., Sanda, T., Kennedy, R.D., Hagen, A.T., Jette, C.A., Hoffmans, R., Pascual, J., Imamura, S., Kishi, S., Amatruda, J.F., Kanki, J.P., Green, D.R., D'Andrea, A.A., and Look, A.T. (2008) Chk1 Suppresses a Caspase-2 Apoptotic Response to DNA Damage that Bypasses p53, Bcl-2, and Caspase-3. Cell. 133(5):864-877

Sorrells, S., Toruno, C., Stewart, R.A., and Jette, C. (2013) Analysis of apoptosis in zebrafish embryos by whole-mount immunofluorescence to detect activated Caspase 3. Journal of visualized experiments : JoVE. (82):e51060

Stewart, R.A., Sanda, T., Widlund, H.R., Zhu, S., Swanson, K.D., Hurley, A.D., Bentires-Alj, M., Fisher, D.E., Kontaridis, M.I., Look, A.T., and Neel, B.G. (2010) Phosphatase-Dependent and -Independent Functions of Shp2 in Neural Crest Cells Underlie LEOPARD Syndrome Pathogenesis. Developmental Cell. 18(5):750-762

Sundvik, M., Chen, Y.C., and Panula, P. (2013) Presenilin1 Regulates Histamine Neuron Development and Behavior in Zebrafish, Danio rerio. The Journal of neuroscience : the official journal of the Society for Neuroscience. 33(4):1589-1597

Sundvik, M., Kudo, H., Toivonen, P., Rozov, S., Chen, Y.C., and Panula, P. (2011) The histaminergic system regulates wakefulness and orexin/hypocretin neuron development via histamine receptor H1 in zebrafish. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 25(12):4338-47

Tao, T., Sondalle, S.B., Shi, H., Zhu, S., Perez-Atayde, A.R., Peng, J., Baserga, S.J., Look, A.T. (2017) The pre-rRNA processing factor DEF is rate limiting for the pathogenesis of MYCN-driven neuroblastoma. Oncogene. 36(27):3852-3867

Than-Trong, E., Ortica-Gatti, S., Mella, S., Nepal, C., Alunni, A., Bally-Cuif, L. (2018) Neural stem cell quiescence and stemness are molecularly distinct outputs of the Notch3 signaling cascade in the vertebrate adult brain. Development (Cambridge, England). 145(10)

To, T.L., Schepis, A., Ruiz-González, R., Zhang, Q., Yu, D., Dong, Z., Coughlin, S.R., Shu, X. (2016) Rational Design of a GFP-Based Fluorogenic Caspase Reporter for Imaging Apoptosis In Vivo. Cell chemical biology. 23:875-82

Toruno, C., Carbonneau, S., Stewart, R.A., and Jette, C. (2014) Interdependence of Bad and Puma during ionizing-radiation-induced apoptosis. PLoS One. 9(2):e88151

Trimpe, D.M., Byrd-Jacobs, C.A. (2016) Patterns of olfactory bulb neurogenesis in the adult zebrafish are altered following reversible deafferentation. Neuroscience. 331:134-47

Vaz, R., Wincent, J., Elfissi, N., Rosengren Forsblad, K., Pettersson, M., Naess, K., Wedell, A., Wredenberg, A., Lindstrand, A., Ygberg, S. (2022) A Missense Variant in PDK1 Associated with Severe Neurodevelopmental Delay and Epilepsy. Biomedicines. 10(12):

Wang, J., Thomas, H.R., Li, Z., Yeo, N.C.F., Scott, H.E., Dang, N., Hossain, M.I., Andrabi, S.A., Parant, J.M. (2021) Puma, noxa, p53, and p63 differentially mediate stress pathway induced apoptosis. Cell Death & Disease. 12:659

Wang, L., Zhang, L., Hou, Q., Zhu, X., Chen, Z., Liu, Z. (2018) Triptolide attenuates proteinuria and podocyte apoptosis via inhibition of NF-κB/GADD45B. Scientific Reports. 8:10843

Warga, R.M., Wicklund, A., Richards, S.E., Kane, D.A. (2016) Progressive loss of RacGAP1/ogre activity has sequential effects on cytokinesis and zebrafish development. Developmental Biology. 418(2):307-22

Wesselman, H.M., Gatz, A.E., Pfaff, M.R., Arceri, L., Wingert, R.A. (2023) Estrogen Signaling Influences Nephron Segmentation of the Zebrafish Embryonic Kidney. Cells. 12(4):

Williams, K., Ribera, A.B. (2020) Long-lived zebrafish Rohon-Beard cells. Developmental Biology. 464(1):45-52

Wong, K.S., Rehn, K., Palencia-Desai, S., Kohli, V., Hunter, W., Uhl, J.D., Rost, M.S., and Sumanas, S. (2012) Hedgehog signaling is required for differentiation of endocardial progenitors in zebrafish. Developmental Biology. 361(2):377-91

Wurster, S., Ruiz, O.E., Samms, K.M., Tatara, A.M., Albert, N.D., Kahan, P.H., Nguyen, A.T., Mikos, A.G., Kontoyiannis, D.P., Eisenhoffer, G.T. (2021) EGF-mediated suppression of cell extrusion during mucosal damage attenuates opportunistic fungal invasion. Cell Reports. 34:108896

Xie, Y., Kaufmann, D., Moulton, M.J., Panahi, S., Gaynes, J.A., Watters, H.N., Zhou, D., Xue, H.H., Fung, C.M., Levine, E.M., Letsou, A., Brennan, K.C., Dorsky, R.I. (2017) Lef1-dependent hypothalamic neurogenesis inhibits anxiety. PLoS Biology. 15:e2002257

Yan, C., Huo, X., Wang, S., Feng, Y., Gong, Z. (2015) Stimulation of hepatocarcinogenesis by neutrophils upon induction of oncogenic kras expression in transgenic zebrafish. Journal of hepatology. 63(2):420-8

Yan, C., Yang, Q., Gong, Z. (2018) Activation of Hepatic Stellate Cells During Liver Carcinogenesis Requires Fibrinogen/Integrin αvβ5 in Zebrafish. Neoplasia (New York, N.Y.). 20:533-542

Yan, C., Yang, Q., Shen, H.M., Spitsbergen, J.M., Gong, Z. (2017) Chronically high level of tgfb1a induction causes both hepatocellular carcinoma and cholangiocarcinoma via a dominant Erk pathway in zebrafish.. Oncotarget. 8:77096-77109

Yang, Q., Yan, C., Gong, Z. (2018) Interaction of hepatic stellate cells with neutrophils and macrophages in the liver following oncogenic kras activation in transgenic zebrafish. Scientific Reports. 8:8495

Yang, Q., Yan, C., Yin, C., Gong, Z. (2017) Serotonin Activated Hepatic Stellate Cells Contribute to Sex Disparity in Hepatocellular Carcinoma. Cellular and molecular gastroenterology and hepatology. 3:484-499

Yao, L., Chen, J., Wu, X., Jia, S., Meng, A. (2017) Zebrafish cdc6 hypomorphic mutation causes Meier-Gorlin syndrome-like phenotype. Human molecular genetics. 26(21):4168-4180

Yokokura, T., Kamei, H., Shibano, T., Yamanaka, D., Sawada-Yamaguchi, R., Hakuno, F., Takahashi, S.I., Shimizu, T. (2017) The Short-Stature Homeobox-Containing Gene (shox/SHOX) Is Required for the Regulation of Cell Proliferation and Bone Differentiation in Zebrafish Embryo and Human Mesenchymal Stem Cells.. Frontiers in endocrinology. 8:125

Yu, J.C., Fox, Z.D., Crimp, J.L., Littleford, H.E., Jowdry, A.L., Jackman, W.R. (2015) Hedgehog signaling regulates dental papilla formation and tooth size during zebrafish odontogenesis. Developmental Dynamics : an official publication of the American Association of Anatomists. 244(4):577-90

Zhang, J.F., Jiang, Z., Liu, X., Meng, A. (2016) Eph-ephrin signaling maintains the boundary of dorsal forerunner cell cluster during morphogenesis of the zebrafish embryonic left-right organizer. Development (Cambridge, England). 143(14):2603-15

Zhang, X., Dong, Z., Zhang, C., Ung, C.Y., He, S., Tao, T., Oliveira, A.M., Meves, A., Ji, B., Look, A.T., Li, H., Neel, B.G., Zhu, S. (2017) Critical Role for GAB2 in Neuroblastoma Pathogenesis through the Promotion of SHP2/MYCN Cooperation. Cell Reports. 18:2932-2942

Zhang, Y., Yang, Y., Trujillo, C., Zhong, W., and Leung, Y.F. (2012) The Expression of irx7 in the Inner Nuclear Layer of Zebrafish Retina Is Essential for a Proper Retinal Development and Lamination. PLoS One. 7(4):e36145

Zhao, F., He, J., Tang, J., Cui, N., Shi, Y., Li, Z., Liu, S., Wang, Y., Ma, M., Zhao, C., Luo, L., Li, L. (2022) Brain milieu induces early microglial maturation through the BAX-Notch axis. Nature communications. 13:6117

Zhao, X., Zhao, L., Tian, T., Zhang, Y., Tong, J., Zheng, X., and Meng, A. (2010) Interruption of cenph causes mitotic failure and embryonic death and its haploinsufficiency suppresses cancer in zebrafish. The Journal of biological chemistry. 285(36):27924-27934

Zheng, X., Yang, S., Han, Y., Zhao, X., Zhao, L., Tian, T., Tong, J., Xu, P., Xiong, C., and Meng, A. (2012) Loss of zygotic NUP107 protein causes missing of pharyngeal skeleton and other tissue defects with impaired nuclear pore function in zebrafish embryos. The Journal of biological chemistry. 287(45):38254-38264

Zhu, S., Zhang, X., Weichert-Leahey, N., Dong, Z., Zhang, C., Lopez, G., Tao, T., He, S., Wood, A.C., Oldridge, D., Ung, C.Y., van Ree, J.H., Khan, A., Salazar, B.M., Lummertz da Rocha, E., Zimmerman, M.W., Guo, F., Cao, H., Hou, X., Weroha, S.J., Perez-Atayde, A.R., Neuberg, D.S., Meves, A., McNiven, M.A., van Deursen, J.M., Li, H., Maris, J.M., Look, A.T. (2017) LMO1 Synergizes with MYCN to Promote Neuroblastoma Initiation and Metastasis. Cancer Cell. 32(3):310-323.e5

Özcan, G.G., Lim, S., Leighton, P., Allison, W.T., Rihel, J. (2020) Sleep is bi-directionally modified by amyloid beta oligomers. eLIFE. 9:

Additional Citations (1):

ZFIN Staff (2008) Antibody information from supplier. Manually curated data.