ZFIN ID: ZDB-PERS-050429-16
Hall, Thomas
Email: t.hall5@uq.edu.au
Affiliation: Parton Lab
Address: Institute for Molecular Bioscience The University of Queensland St Lucia Brisbane 4072 Australia
Country: Australia


Hall, T.E., Ariotti, N., Lo, H.P., Rae, J., Ferguson, C., Martel, N., Lim, Y.W., Giacomotto, J., Parton, R.G. (2023) Cell surface plasticity in response to shape change in the whole organism. Current biology : CB. 33(19):4276-4284.e4
Tromp, A., Wang, H., Hall, T.E., Mowry, B., Giacomotto, J. (2023) Optimising the zebrafish Cre/Lox toolbox. Codon improved iCre, new gateway tools, Cre protein and guidelines. Frontiers in Physiology. 14:12213101221310
Wu, Y., Lim, Y.W., Stroud, D.A., Martel, N., Hall, T.E., Lo, H.P., Ferguson, C., Ryan, M.T., McMahon, K.A., Parton, R.G. (2023) Caveolae sense oxidative stress through membrane lipid peroxidation and cytosolic release of CAVIN1 to regulate NRF2. Developmental Cell. 58(5):376-397.e4
Morgan, K.J., Doggett, K., Geng, F., Mieruszynski, S., Whitehead, L., Smith, K.A., Hogan, B.M., Simons, C., Baillie, G.J., Molania, R., Papenfuss, A.T., Hall, T.E., Ober, E.A., Stainier, D.Y.R., Gong, Z., Heath, J.K. (2023) ahctf1 and kras mutations combine to amplify oncogenic stress and restrict liver overgrowth in a zebrafish model of hepatocellular carcinoma. eLIFE. 12:
Lo, H.P., Lim, Y.W., Xiong, Z., Martel, N., Ferguson, C., Ariotti, N., Giacomotto, J., Rae, J., Floetenmeyer, M., Moradi, S.V., Gao, Y., Tillu, V.A., Xia, D., Wang, H., Rahnama, S., Nixon, S.J., Bastiani, M., Day, R.D., Smith, K.A., Palpant, N.J., Johnston, W.A., Alexandrov, K., Collins, B.M., Hall, T.E., Parton, R.G. (2021) Cavin4 interacts with Bin1 to promote T-tubule formation and stability in developing skeletal muscle. The Journal of cell biology. 220(12)
Xiong, Z., Lo, H.P., McMahon, K.A., Parton, R.G., Hall, T.E. (2021) Proximity Dependent Biotin Labelling in Zebrafish for Proteome and Interactome Profiling. Bio-protocol. 11:e4178
Tromp, A., Robinson, K., Hall, T.E., Mowry, B., Giacomotto, J. (2021) Pipeline for generating stable large genomic deletions in zebrafish, from small domains to whole gene excisions. G3 (Bethesda). 11(12):
Duszyc, K., Gomez, G.A., Lagendijk, A.K., Yau, M.K., Nanavati, B.N., Gliddon, B.L., Hall, T.E., Verma, S., Hogan, B.M., Pitson, S.M., Fairlie, D.P., Parton, R.G., Yap, A.S. (2021) Mechanotransduction activates RhoA in the neighbors of apoptotic epithelial cells to engage apical extrusion. Current biology : CB. 31(6):1326-1336.e5
Don, E.K., Maschirow, A., Radford, R.A.W., Scherer, N.M., Vidal-Itriago, A., Hogan, A., Maurel, C., Formella, I., Stoddart, J.J., Hall, T.E., Lee, A., Shi, B., Cole, N.J., Laird, A.S., Badrock, A.P., Chung, R.S., Morsch, M. (2021) In vivo Validation of Bimolecular Fluorescence Complementation (BiFC) to Investigate Aggregate Formation in Amyotrophic Lateral Sclerosis (ALS). Molecular neurobiology. 58(5):2061-2074
Hall, T.E., Martel, N., Ariotti, N., Xiong, Z., Lo, H.P., Ferguson, C., Rae, J., Lim, Y.W., Parton, R.G. (2020) In vivo cell biological screening identifies an endocytic capture mechanism for T-tubule formation. Nature communications. 11:3711
Hall, T.E., Wood, A.J., Ehrlich, O., Li, M., Sonntag, C.S., Cole, N.J., Huttner, I.G., Sztal, T.E., Currie, P.D. (2019) Cellular rescue in a zebrafish model of congenital muscular dystrophy type 1A. NPJ Regenerative medicine. 4:21
de Winter, J.M., Molenaar, J.P., Yuen, M., van der Pijl, R., Shen, S., Conijn, S., van de Locht, M., Willigenburg, M., Bogaards, S.J., van Kleef, E.S., Lassche, S., Persson, M., Rassier, D.E., Sztal, T.E., Ruparelia, A.A., Oorschot, V., Ramm, G., Hall, T.E., Xiong, Z., Johnson, C.N., Li, F., Kiss, B., Lozano-Vidal, N., Boon, R.A., Marabita, M., Nogara, L., Blaauw, B., Rodenburg, R.J., Kϋsters, B., Doorduin, J., Beggs, A.H., Granzier, H., Campbell, K., Ma, W., Irving, T., Malfatti, E., Romero, N.B., Bryson-Richardson, R.J., van Engelen, B.G., Voermans, N.C., Ottenheijm, C.A. (2019) KBTBD13 is an actin-binding protein that modulates muscle kinetics. The Journal of Clinical Investigation. 130(2):754-767
Grassini, D.R., Da Silva, J., Hall, T.E., Baillie, G.J., Simons, C., Parton, R.G., Hogan, B.M., Smith, K.A. (2019) Myosin Vb is required for correct trafficking of N-cadherin and cardiac chamber ballooning. Developmental Dynamics : an official publication of the American Association of Anatomists. 248(4):284-295
Tillu, V.A., Lim, Y.W., Kovtun, O., Mureev, S., Ferguson, C., Bastiani, M., McMahon, K.A., Lo, H.P., Hall, T.E., Alexandrov, K., Collins, B.M., Parton, R.G. (2018) A variable undecad repeat domain in cavin1 regulates caveola formation and stability. EMBO reports. 19(9):
Lim, Y.W., Lo, H.P., Ferguson, C., Martel, N., Giacomotto, J., Gomez, G.A., Yap, A.S., Hall, T.E., Parton, R.G. (2017) Caveolae Protect Notochord Cells against Catastrophic Mechanical Failure during Development. Current biology : CB. 27(13):1968-1981.e7
Nguyen, P.D., Gurevich, D.B., Sonntag, C., Hersey, L., Alaei, S., Nim, H.T., Siegel, A., Hall, T.E., Rossello, F.J., Boyd, S.E., Polo, J.M., Currie, P.D. (2017) Muscle Stem Cells Undergo Extensive Clonal Drift during Tissue Growth via Meox1-Mediated Induction of G2 Cell-Cycle Arrest. Cell Stem Cell. 21:107-119.e6
Hall, T.E., Martel, N., Lo, H.P., Xiong, Z., Parton, R.G. (2017) A plasmid library of full-length zebrafish rab proteins for in vivo cell biology.. Cellular logistics. 7:e1301151
Don, E.K., Formella, I., Badrock, A.P., Hall, T.E., Morsch, M., Hortle, E., Hogan, A., Chow, S., Gwee, S.S., Stoddart, J.J., Nicholson, G., Chung, R., Cole, N.J. (2017) A Tol2 Gateway-Compatible Toolbox for the Study of the Nervous System and Neurodegenerative Disease. Zebrafish. 14(1):69-72
Ariotti, N., Hall, T.E., Parton, R.G. (2017) Correlative light and electron microscopic detection of GFP-labeled proteins using modular APEX. Methods in cell biology. 140:105-121
Masselink, W., Cole, N.J., Fenyes, F., Berger, S., Sonntag, C., Wood, A., Nguyen, P.D., Cohen, N., Knopf, F., Weidinger, G., Hall, T.E., Currie, P.D. (2016) A somitic contribution to the apical ectodermal ridge is essential for fin formation. Nature. 535(7613):542-6
Gurevich, D.B., Nguyen, P.D., Siegel, A.L., Ehrlich, O.V., Sonntag, C., Phan, J.M., Berger, S., Ratnayake, D., Hersey, L., Berger, J., Verkade, H., Hall, T.E., Currie, P.D. (2016) Asymmetric division of clonal muscle stem cells coordinates muscle regeneration in vivo. Science (New York, N.Y.). 353(6295):aad9969
Hall, T.E., Ariotti, N., Ferguson, C., Xiong, Z., Parton, R.G. (2016) New Transgenic Lines for Localization of GFP-Tagged Proteins by Electron Microscopy. Zebrafish. 13:232-3
Don, E.K., de Jong-Curtain, T.A., Doggett, K., Hall, T.E., Heng, B., Badrock, A.P., Winnick, C., Nicholson, G.A., Guillemin, G.J., Currie, P.D., Hesselson, D., Heath, J.K., Cole, N.J. (2016) Genetic basis of hindlimb loss in a naturally occurring vertebrate model. Biology Open. 5(3):359-66
Lo, H.P., Hall, T.E., Parton, R.G. (2016) Mechanoprotection by skeletal muscle caveolae. Bioarchitecture. 6(1):22-7
Ariotti, N., Hall, T.E., Rae, J., Ferguson, C., McMahon, K.A., Martel, N., Webb, R.E., Webb, R.I., Teasdale, R.D., Parton, R.G. (2015) Modular Detection of GFP-Labeled Proteins for Rapid Screening by Electron Microscopy in Cells and Organisms. Developmental Cell. 35(4):513-25
Sztal, T.E., Zhao, M., Williams, C., Oorschot, V., Parslow, A.C., Giousoh, A., Yuen, M., Hall, T.E., Costin, A., Ramm, G., Bird, P.I., Busch-Nentwich, E.M., Stemple, D.L., Currie, P.D., Cooper, S.T., Laing, N.G., Nowak, K.J., Bryson-Richardson, R.J. (2015) Zebrafish models for nemaline myopathy reveal a spectrum of nemaline bodies contributing to reduced muscle function. Acta Neuropathologica. 130(3):389-406
Morsch, M., Radford, R., Lee, A., Don, E.K., Badrock, A.P., Hall, T.E., Cole, N.J., Chung, R. (2015) In vivo characterization of microglial engulfment of dying neurons in the zebrafish spinal cord. Frontiers in Cellular Neuroscience. 9:321
Lo, H.P., Nixon, S.J., Hall, T.E., Cowling, B.S., Ferguson, C., Morgan, G.P., Schieber, N.L., Fernandez-Rojo, M.A., Bastiani, M., Floetenmeyer, M., Martel, N., Laporte, J., Pilch, P.F., Parton, R.G. (2015) The caveolin-cavin system plays a conserved and critical role in mechanoprotection of skeletal muscle. The Journal of cell biology. 210:833-49
Berger, J., Hall, T.E., Currie, P.D. (2015) Novel Transgenic Lines to Label Sarcolemma and Myofibrils of the Musculature. Zebrafish. 12(1):124-5
Berger, J., Tarakci, H., Berger, S., Li, M., Hall, T.E., Arner, A., Currie, P.D. (2014) Loss of tropomodulin4 in the zebrafish mutant träge causes cytoplasmic rod formation and muscle weakness reminiscent of nemaline myopathy. Disease models & mechanisms. 7(12):1407-15
Nguyen, P.D., Hollway, G.E., Sonntag, C., Miles, L.B., Hall, T.E., Berger, S., Fernandez, K.J., Gurevich, D.B., Cole, N.J., Alaei, S., Ramialison, M., Sutherland, R.L., Polo, J.M., Lieschke, G.J., Currie, P.D. (2014) Haematopoietic stem cell induction by somite-derived endothelial cells controlled by meox1. Nature. 512(7514):314-8
Acosta, J.R., Goldsbury, C., Winnick, C., Badrock, A.P., Fraser, S.T., Laird, A.S., Hall, T.E., Don, E.K., Fifita, J.A., Blair, I.P., Nicholson, G.A., Cole, N.J. (2014) Mutant Human FUS Is Ubiquitously Mislocalized and Generates Persistent Stress Granules in Primary Cultured Transgenic Zebrafish Cells. PLoS One. 9(6):e90572
Sztal, T.E., Sonntag, C., Hall, T.E., and Currie, P.D. (2012) Epistatic dissection of laminin-receptor interactions in dystrophic zebrafish muscle. Human molecular genetics. 21(21):4718-4731
Johnson, J.L., Hall, T.E., Dyson, J.M., Sonntag, C., Ayers, K., Berger, S., Gautier, P., Mitchell, C., Hollway, G.E., and Currie, P.D. (2012) Scube activity is necessary for Hedgehog signal transduction in vivo. Developmental Biology. 368(2):193-202
Goldshmit, Y., Sztal, T.E., Jusuf, P.R., Hall, T.E., Nguyen-Chi, M., and Currie, P.D. (2012) Fgf-dependent glial cell bridges facilitate spinal cord regeneration in zebrafish. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32(22):7477-7492
Gupta, V.A., Kawahara, G., Myers, J.A., Chen, A.T., Hall, T.E., Manzini, M.C., Currie, P.D., Zhou, Y., Zon, L.I., Kunkel, L.M., and Beggs, A.H. (2012) A Splice Site Mutation in Laminin-alpha2 Results in a Severe Muscular Dystrophy and Growth Abnormalities in Zebrafish. PLoS One. 7(8):e43794
Nguyen-Chi, M.E., Bryson-Richardson, R., Sonntag, C., Hall, T.E., Gibson, A., Sztal, T., Chua, W., Schilling, T.F., and Currie, P.D. (2012) Morphogenesis and Cell Fate Determination within the Adaxial Cell Equivalence Group of the Zebrafish Myotome. PLoS Genetics. 8(10):e1003014
Cole, N.J., Hall, T.E., Don, E.K., Berger, S., Boisvert, C.A., Neyt, C., Ericsson, R., Joss, J., Gurevich, D.B., and Currie, P.D. (2011) Development and evolution of the muscles of the pelvic fin. PLoS Biology. 9(10):e1001168
Williams, R.J., Hall, T.E., Glattauer, V., White, J., Pasic, P.J., Sorensen, A.B., Waddington, L., McLean, K.M., Currie, P.D., and Hartley, P.G. (2011) The in vivo performance of an enzyme-assisted self-assembled peptide/protein hydrogel. Biomaterials. 32(22):5304-5310
Don, E.K., Hall, T.E., Currie, P.D., and Cole, N.J. (2011) Morphology of pelvic fin loss in a zebrafish strain (Danio rerio). Journal of morphology. 272(5):583-589
Sztal, T., Berger, S., Currie, P.D., and Hall, T.E. (2011) Characterization of the laminin gene family and evolution in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 240(2):422-431
Berger, J., Berger, S., Hall, T.E., Lieschke, G.J., and Currie, P.D. (2010) Dystrophin-deficient zebrafish feature aspects of the Duchenne muscular dystrophy pathology. Neuromuscular disorders : NMD. 20(12):826-832
Jacoby, A.S., Busch-Nentwich, E., Bryson-Richardson, R.J., Hall, T.E., Berger, J., Berger, S., Sonntag, C., Sachs, C., Geisler, R., Stemple, D.L., and Currie, P.D. (2009) The zebrafish dystrophic mutant softy maintains muscle fibre viability despite basement membrane rupture and muscle detachment. Development (Cambridge, England). 136(19):3367-3376
Bryson-Richardson, R.J., Berger, S., Schilling, T.F., Hall, T.E., Cole, N.J., Gibson, A.J., Sharpe, J., and Currie, P.D. (2007) FishNet: an online database of zebrafish anatomy. BMC Biology. 5(1):34
Hall, T.E., Bryson-Richardson, R.J., Berger, S., Jacoby, A.S., Cole, N.J., Hollway, G.E., Berger, J., and Currie, P.D. (2007) The zebrafish candyfloss mutant implicates extracellular matrix adhesion failure in laminin {alpha}2-deficient congenital muscular dystrophy. Proceedings of the National Academy of Sciences of the United States of America. 104(17):7092-7097
Hollway, G.E., Bryson-Richardson, R.J., Berger, S., Cole, N.J., Hall, T.E., and Currie, P.D. (2007) Whole-somite rotation generates muscle progenitor cell compartments in the developing zebrafish embryo. Developmental Cell. 12(2):207-219
Hall, T.E., Bryson-Richardson, R.J., Cole, N.J., Currie, P.D. (2005) Muscle stem cells and regeneration in zebrafish models of muscular dystrophies. Mechanisms of Development. 122:S131
Johnston, I.A., Hall, T.E., and Govoni, J.J. (ed.) (2004) Mechanisms of muscle development and responses to temperature change in fish larvae. The development of form and function in fishes and the question of larval adaptation. American Fisheries Society Symp.. 40(1):113-144

Cole, N.J., Hall, T.E., Martin, C.I., Chapman, M.A., Kobiyama, A., Nihei, Y., Watabe, S., and Johnston, I.A. (2004) Temperature and the expression of myogenic regulatory factors (MRFs) and myosin heavy chain isoforms during embryogenesis in the common carp Cyprinus carpio L. J Exp Biol., 207(Pt 24):4239-48.

Hall, T.E., Smith, P., and Johnston, I.A. (2004) Stages of embryonic development in the Atlantic cod Gadus morhua. J Morphol., 259(3):255-70.

Hall, T.E., Cole, N.J., and Johnston, I.A. Temperature and the expression of seven muscle-specific protein genes during embryogenesis in the Atlantic cod Gadus morhua L. (2003) J Exp Biol., 206(Pt 18):3187-200.