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ZIRC
ZFIN ID: ZDB-GENE-990415-200
Gene Name: paired box 6a
Gene Symbol: pax6a
Sequence Ontology ID : SO:0000704

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Previous Names: pax-a, Pax6.1, pax6, pax[zf-a] (1), paxzfa, zfpax-6a, cb280 (1), etID309716.25 (1), fc20e07, wu:fc20e07 (1), zfpax-6b

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(Including Attributions)
Location: Chr: 25 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Exhibits DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Involved in several processes, including nervous system development;  ...
GENE EXPRESSION
All Expression Data: 202 figures from 149 publications
Directly Submitted Expression Data: 6 figures (19 images) from Thisse et al., 2001 [cb280]
  6 figures (15 images) from Thisse et al., 2005 [eu626]
Wild-type Stages, Structures: Gastrula:75%-epiboly (8.0h-9.0h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la023151Tg Transgenic Insertion Unknown Unknown DNA
Targeting reagents:
DISEASE ASSOCIATED WITH pax6a HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
aniridia Aniridia 106210
Cataract with late-onset corneal dystrophy 106210
coloboma ?Coloboma, ocular 120200
coloboma of optic nerve ?Coloboma of optic nerve 120430
?Morning glory disc anomaly 120430
Peters anomaly Anterior segment dysgenesis 5, multiple subtypes 604229
Foveal hypoplasia 1 136520
Optic nerve hypoplasia 165550
Keratitis 148190
DISEASE ASSOCIATED WITH pax6a VIA EXPERIMENTAL MODELS No data available
TRANSCRIPTS
Type Name Length (bp) Analysis
ncRNA pax6a-010 (1) 306
mRNA pax6a-201 (1) 876
pax6a-202 (1) 860
pax6a-203 (1) 1006
pax6a-204 (1) 2730
pax6a-205 (1) 2797
pax6a-206 (1) 933
pax6a-207 (1) 1922
pax6a-208 (1) 911
pax6a-210 (1) 699
 Withdrawn Transcriptsextinct
GENE PRODUCT DESCRIPTION
INTERACTIONS AND PATHWAYS
ANTIBODIES
PLASMIDSNo data available
MARKER RELATIONSHIPS
pax6aContained in: [BAC] DKEY-82I7 (1) (order this), DKEYP-46C10 (1)
pax6aEncodes: [EST] cb280 (1) (order this), eu626 (1), fc20e07 (1)
[cDNA] MGC:76866 (1) (order this)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_131304 (1) 2809bp
Genomic GenBank:AL929172 (1) 182666bp
Select Tool
Polypeptide UniProtKB:A0A0R4IXU2 (1) 441aa
Sequence Clusters UniGene:24244 (1)
Sequence Information (all 58)
ORTHOLOGY for pax6a (Chr: 25)
CITATIONS (304)