ZFIN ID: ZDB-GENE-030616-403
Gene Name: coagulation factor C homolog, cochlin (Limulus polyphemus)
Gene Symbol: coch    Nomenclature History

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Previous Name: si:dz234g15.4

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 17 Mapping Details/Browsers
Description: Predicted to be involved in growth plate cartilage chondrocyte morphogenesis. Predicted to localize to collagen-containing extracellular matrix and extracellular space. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 9 and autosomal recessive nonsyndromic deafness 110. Orthologous to human COCH (cochlin).
Genome Resources: Alliance (1),  Gene:368851 (1),  Ensembl(GRCz11):ENSDARG00000024032 (2)
GENE EXPRESSION No data available
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa12192 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa23098 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa23099 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa36439 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-coch
    1
    CRISPR2-coch
    3
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH coch HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    autosomal dominant nonsyndromic deafness 9 Alliance Deafness, autosomal dominant 9 601369
    autosomal recessive nonsyndromic deafness 110 Alliance ?Deafness, autosomal recessive 110 618094
    DISEASE ASSOCIATED WITH coch VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process defense response to bacterium (more)
    Cellular Component collagen-containing extracellular matrix (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA coch-201 (1)    Ensembl 2135
    ncRNA coch-002 (1)    Ensembl 815
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM coch No data available
    MARKER RELATIONSHIPS
    coch Contained in: [BAC] DKEY-18B8 (1) (order this)
    [PAC] BUSM1-234G15 (1)
    coch Encodes: [cDNA] MGC:193705 (1), MGC:193723 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001003823 (1) 1800 nt
    Genomic GenBank:BX324186 (1) 153540 nt
    Select Tool
    Polypeptide UniProtKB:B3DFV8 (1) 553 aa
    Sequence Information (all 16)
    ORTHOLOGY for coch ( Chr: 17 )
    CITATIONS (23)