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General Information
ZIRC
ZFIN ID: ZDB-GENE-030131-6022
Gene Name: integrin, beta 5
Gene Symbol: itgb5
Sequence Ontology ID : SO:0000704

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Previous Name: wu:fi30h12

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(Including Attributions)
Location: Chr: 9 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have integrin binding activity; predicted to be involved in several processes, including cell adhesion mediated by integrin, cell migration, and cell-matrix adhesion; predicted to  ...
GENE EXPRESSION
All Expression Data: Fig. 4 from Ablooglu et al., 2010
Wild-type Stages, Structures: Gastrula:75%-epiboly (8.0h-9.0h) to Gastrula:75%-epiboly (8.0h-9.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la026818Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa11845 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH itgb5 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH itgb5 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cell adhesion (more)
    Cellular Component integral component of membrane (more)
    Molecular Function signaling receptor activity (more)
    GO Terms (all 12)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA itgb5-002 (1) 1967
    itgb5-003 (1) 375
    mRNA itgb5-203 (1) 767
    itgb5-204 (1) 3427
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM itgb5 No data available
    MARKER RELATIONSHIPS
    itgb5Contained in: [BAC] DKEY-16N5 (1) (order this), DKEY-16P7 (1) (order this), DKEY-89P3 (1) (order this)
    itgb5Contains: [SNP] rs3728219 (1), rs3728220 (1), rs3728221 (1), rs3728222 (1), rs3728223 (1)
    itgb5Encodes: [EST] fi30h12
    [cDNA] MGC:163102 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001082836 (1) 3363bp
    Genomic GenBank:CR391905 (1) 221511bp Blast at MegaBLAST
    Polypeptide UniProtKB:F1QF91 (1) 823aa
    Sequence Clusters UniGene:34301 (1)
    Sequence Information (all 23)
    ORTHOLOGY for itgb5 (Chr: 9)
    CITATIONS (29)