ZFIN ID: ZDB-GENE-030131-579
Gene Name: RNA binding motif protein X-linked
Gene Symbol: rbmx    Nomenclature History

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Previous Names: fc66e11 (1), wu:fb37c07 (1), wu:fc66e11 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 14 Mapping Details/Browsers
Description: Predicted to have chromatin binding activity and nucleic acid binding activity. Predicted to be involved in several processes, including RNA metabolic process; cellular response to interleukin-1; and regulation of mRNA splicing, via spliceosome. Predicted to localize to extracellular exosome and nucleus. Is expressed in several structures, including brain; digestive system; immature eye; notochord; and retinal ganglion cell layer. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability Shashi type. Orthologous to several human genes including RBMX (RNA binding motif protein X-linked).
Genome Resources: Alliance (1),  Gene:321860 (1),  Ensembl(GRCz11):ENSDARG00000014244 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la012560Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa22508 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa30981 Point Mutation Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa42413 Point Mutation Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-rbmx N/A 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rbmx HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    syndromic X-linked intellectual disability Shashi type Alliance ?Mental retardation, X-linked, syndromic 11, Shashi type 300238
    DISEASE ASSOCIATED WITH rbmx VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cellular response to interleukin-1 (more)
    Cellular Component catalytic step 2 spliceosome (more)
    Molecular Function chromatin binding (more)
    GO Terms (all 25)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    aberrant processed transcript rbmx-204 (1)    Ensembl 1145
    mRNA rbmx-201 (1)    Ensembl 882
    rbmx-202 (1)    Ensembl 1560
    rbmx-203 (1)    Ensembl 888
    rbmx-207 (1)    Ensembl 386
    ncRNA rbmx-003 (1)    Ensembl 1094
    rbmx-005 (1)    Ensembl 721
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM rbmx No data available
    MARKER RELATIONSHIPS
    rbmx Contained in: [BAC] CH211-127L15 (1)
    rbmx Encodes: [EST] cegs2567 (1) (order this), fb37c07, fc66e11
    [cDNA] MGC:56625 (1), MGC:86631 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_212598 (1) 1579 nt
    Genomic GenBank:AL929434 (1) 178948 nt
    Select Tool
    Polypeptide UniProtKB:Q7ZWA3 (1) 379 aa
    Sequence Information (all 34)
    ORTHOLOGY for rbmx ( Chr: 14 )
    CITATIONS (34)