ZFIN ID: ZDB-GENE-980526-419

Mapping Details

Gene Name: LIM domain only 2 (rhombotin-like 1)
Symbol: lmo2
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN Gbrowse 18 38,288,877 - 38,296,665 GRCz11
Ensembl 18 38,288,877 - 38,296,665 GRCz11
Vega 18 38,307,869 - 38,315,657 GRCv10
NCBI Map Viewer 18 38,288,980 - 38,296,665 GRCz11
UCSC 18 - GRCv10
Mapped Clones containing lmo2
DKEY-10O6 Chr: 18 Details
CH73-110E4 Chr: 18 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
vu270 18 38,295,634 GRCz11 Weiss et al., 2012

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
18 102.7 cM lmo2 Mother of Pearl (MOP) Postlethwait, John H. Data
18 425.72 cR lmo2 Loeb/NIH/5000/4000 (LN54) Dawid, Igor B. Data
18 3718.0 cR lmo2 Goodfellow T51 (T51) Geisler, Robert Data
18 86.6 cM lmo2 Heat Shock (HS) Woods, Ian G. Data
18 60.9 cM lmo2 Gates et al (GAT) Talbot, William S. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z3853 SSLP 18 Matthews et al., 2004 Matthews et al. (2004. Dev. Biol. 274(2):245-259) mapped onecut1 to LG18 using a radiation hybrid panel.
onecut1 GENE 18 30.0 cR Matthews et al., 2004 Matthews et al. (2004. Dev. Biol. 274(2):245-259) mapped onecut1 to LG18 using a radiation hybrid panel.
fc83a08 EST 18 Matthews et al., 2004 Matthews et al. (2004. Dev. Biol. 274(2):245-259) mapped onecut1 to LG18 using a radiation hybrid panel.
fb96a11 EST 18 Matthews et al., 2004 Matthews et al. (2004. Dev. Biol. 274(2):245-259) mapped onecut1 to LG18 using a radiation hybrid panel.

OTHER MAPPING INFORMATION
Markers Encoded by lmo2
fc83a08 Chr: 18 Details
Primer Sets:
Strain Bandsize Restriction Enzyme Annealing Temperature [C]
SJD HhaI 36.0
Forward Primer CCACAAACAAGACGGAGCCTA
Reverse Primer CGCACAAACGCTTCAGAGAT