ZFIN ID: ZDB-GENE-980526-365

Mapping Details

Gene Name:	homeobox A13b
Symbol:	hoxa13b

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	16	22,247,107 - 22,249,036	GRCz12tu
NCBI Map Viewer	16	22,247,107 - 22,249,036	GRCz12tu
Ensembl	16	20,895,904 - 20,897,836	GRCz11
NCBI Map Viewer	16	20,895,904 - 20,897,833	GRCz11
UCSC	16	-	GRCz11
Vega	16	21,090,085 - 21,092,017	GRCv10

Mapped Clones containing hoxa13b
DKEY-45E15	Chr: 16 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
ch308	16	20,896,037	GRCz11	DIRECT		Nakamura et al., 2016
hu3581	16	22,247,698	GRCz12tu	DIRECT		Sealy et al., 2025
	16	20,896,495	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	16	21,090,676	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	16	22,980,925	Zv9	DIRECT		Busch-Nentwich et al., 2013
w243	16	20,896,271 - 20,896,290	GRCz11	DIRECT		Ye et al., 2020
	16	20,896,271 - 20,896,290	GRCz11	DIRECT		Zebrafish Nomenclature Committee
ch308	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	16		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
hu3581	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	16		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
w243	16		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
16	74.5 cM	hoxa13b	Mother of Pearl (MOP)	Postlethwait, John H.	Data
16	53.7 cM	hoxa13b	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
hoxa11b	GENE	16		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxa13b, hoxa11b, hoxa10b, hoxa9b, and hoxa2b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG16.
hoxa10b	GENE	16		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxa13b, hoxa11b, hoxa10b, hoxa9b, and hoxa2b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG16.
hoxa2b	GENE	16		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxa13b, hoxa11b, hoxa10b, hoxa9b, and hoxa2b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG16.
hoxa9b	GENE	16		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxa13b, hoxa11b, hoxa10b, hoxa9b, and hoxa2b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG16.

Chr 16

Amores et al., 1998

Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxa13b, ...

Markers Encoded by hoxa13b
fa66g07 Chr: 16 Details

Genomic Feature w243 is an allele of hoxa13b