ZFIN ID: ZDB-GENE-000823-2
Gene Name: homeobox A9b
Gene Symbol: hoxa9b    Nomenclature History

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Previous Names: Hoxa-9, zgc:110504

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 16 Mapping Details/Browsers
Description: Predicted to have sequence-specific DNA binding activity. Predicted to be involved in multicellular organism development; regulation of transcription, DNA-templated; and transcription, DNA-templated. Predicted to localize to the nucleus. Is expressed in several structures, including chondroblast; mesenchyme; myoblast; pectoral fin bud; and pectoral fin field. Orthologous to human HOXA9 (homeobox A9).
Genome Resources: Alliance (1),  Gene:58048 (1),  Ensembl(GRCz11):ENSDARG00000056819 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la027699Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa6422 Point Mutation Unknown Premature Stop ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH hoxa9b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH hoxa9b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process multicellular organism development (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 12)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR001356 Homeobox domain
    Domain IPR006711 Hox9, N-terminal activation domain
    Homologous_superfamily IPR009057 Homeobox-like domain superfamily
    Family IPR017112 Homeobox protein HXA9/HXB9/HXC9
    Conserved_site IPR017970 Homeobox, conserved site
    Domain IPR020479 Homeobox domain, metazoa
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA hoxa9b-201 (1)    Ensembl 1495
    ottdart00000001849 (1) 726
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS
    Addgene:Hox A9b
    CONSTRUCTS WITH SEQUENCES FROM hoxa9b No data available
    MARKER RELATIONSHIPS
    hoxa9b Contained in: [BAC] DKEY-45E15 (1) (order this)
    [PAC] BUSM1-31B14 (1)
    hoxa9b Encodes: [cDNA] MGC:110504 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131533 (1) 777 bp
    Genomic GenBank:CR392024 (1) 183486 bp
    Select Tool
    Polypeptide UniProtKB:F1QQN5 (1) 253 aa
    Sequence Information (all 20)
    ORTHOLOGY for hoxa9b ( Chr: 16 )
    CITATIONS (58)