ZFIN ID: ZDB-GENE-990415-119
Gene Name: homeobox D13a
Gene Symbol: hoxd13a    Nomenclature History

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Previous Names: hoxd-13, hoxd13, zgc:110511

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 9 Mapping Details/Browsers
Description: Predicted to have sequence-specific DNA binding activity. Predicted to be involved in multicellular organism development and regulation of transcription, DNA-templated. Predicted to localize to nucleus. Human ortholog(s) of this gene implicated in brachydactyly (multiple); brachydactyly-syndactyly syndrome; clubfoot; and cryptorchidism. Is expressed in several structures, including cloaca; mesenchyme; pectoral fin bud; periderm; and tail bud. Orthologous to human HOXD13 (homeobox D13).
Genome Resources: Alliance (1),  Gene:30407 (1),  Ensembl(GRCz11):ENSDARG00000059256 (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa9140 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-hoxd13a
    1
    CRISPR2-hoxd13a
    1
    MO1-hoxd13a N/A 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH hoxd13a HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    brachydactyly type D Alliance Brachydactyly, type D 113200
    brachydactyly type E1 Alliance Brachydactyly, type E 113300
    brachydactyly-syndactyly syndrome Alliance ?Brachydactyly-syndactyly syndrome 610713
    syndactyly type 5 Alliance Syndactyly, type V 186300
    synpolydactyly Alliance Synpolydactyly 1 186000
    DISEASE ASSOCIATED WITH hoxd13a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process multicellular organism development (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA hoxd13a-201 (1)    Ensembl 1687
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM hoxd13a No data available
    MARKER RELATIONSHIPS
    hoxd13a Contained in: [BAC] RP71-78H1 (1)
    hoxd13a Encodes: [EST] eu794 (1)
    [cDNA] MGC:110511 (1), MGC:174639 (1), MGC:192539 (1), MGC:195305 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_131169 (1) 1200 nt
    Genomic GenBank:BX322661 (1) 146527 nt
    Select Tool
    Polypeptide UniProtKB:A8E5N0 (1) 256 aa
    Sequence Information (all 25)
    ORTHOLOGY for hoxd13a ( Chr: 9 )
    CITATIONS (50)