FIGURE

Fig. 3

ID

ZDB-FIG-200801-4

Publication

Cang et al., 2020 - Inferring spatial and signaling relationships between cells from single cell transcriptomic data

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Fig. 3

Metric spaces and spatial gene atlases for scRNA-seq data.

a A low-dimensional spatial visualization (UMAP) of mouse visual cortex scRNA-seq data (ref. ³⁷) using the cell–cell distance inferred by SpaOTsc with the spatial data (ref. ³⁸). The cell labels are taken from ref. ³⁷. b Similar to (a) but for Drosophila embryo data (ref. ¹⁰). c, d The gene spatial atlases for mouse visual cortex data (c) and Drosophila embryo data (d) consisted of collections of highly variable genes where nodes represent genes and edges indicate similarity in spatial pattern.

Expression Data

Expression Detail

Antibody Labeling

Phenotype Data

Phenotype Detail

Acknowledgments

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