IMAGE

Fig. 3

ID: ZDB-IMAGE-200801-7
Publication: Cang et al., 2020 - Inferring spatial and signaling relationships between cells from single cell transcriptomic data
All Figures: Figures for Cang et al., 2020

Image

Figure Caption

Fig. 3 Metric spaces and spatial gene atlases for scRNA-seq data.

a A low-dimensional spatial visualization (UMAP) of mouse visual cortex scRNA-seq data (ref. ³⁷) using the cell–cell distance inferred by SpaOTsc with the spatial data (ref. ³⁸). The cell labels are taken from ref. ³⁷. b Similar to (a) but for Drosophila embryo data (ref. ¹⁰). c, d The gene spatial atlases for mouse visual cortex data (c) and Drosophila embryo data (d) consisted of collections of highly variable genes where nodes represent genes and edges indicate similarity in spatial pattern.

Acknowledgments

This image is the copyrighted work of the attributed author or publisher, and ZFIN has permission only to display this image to its users. Additional permissions should be obtained from the applicable author or publisher of the image. Full text @ Nat. Commun.