ZFIN ID: ZDB-GENE-040707-1

Mapping Details

Gene Name: iroquois homeobox 1a
Symbol: irx1a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN Gbrowse 16 813,780 - 817,937 GRCz11
Ensembl 16 813,780 - 817,937 GRCz11
Vega 16 737,423 - 741,827 GRCv10
NCBI Map Viewer 16 813,610 - 817,775 GRCz11
UCSC 16 - GRCv10
UCSC 16 - GRCv10
Mapped Clones containing irx1a
CH73-211K12 Chr: 16 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
sa15451 16 816,450 GRCz11 Busch-Nentwich et al., 2013
16 740,502 GRCz10 Busch-Nentwich et al., 2013
16 823,481 Zv9 Busch-Nentwich et al., 2013
sa24999 16 813,803 GRCz11 Busch-Nentwich et al., 2013
16 737,855 GRCz10 Busch-Nentwich et al., 2013
16 820,834 Zv9 Busch-Nentwich et al., 2013
sa42638 16 817,457 GRCz11 Busch-Nentwich et al., 2013
16 741,509 GRCz10 Busch-Nentwich et al., 2013
16 824,488 Zv9 Busch-Nentwich et al., 2013
sa45558 16 816,519 GRCz11 Busch-Nentwich et al., 2013
16 740,571 GRCz10 Busch-Nentwich et al., 2013
16 823,550 Zv9 Busch-Nentwich et al., 2013
zf3177 16 813,821 - 813,822 GRCz11 Jung et al., 2019

GENETIC MAPPING PANELS: No data available
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
nrsn1 GENE 16 Dildrop et al., 2004 Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to  ...
z9535 SSLP 16 3.0 cR Dildrop et al., 2004 Dildrop and Ruther (2004, Dev. Genes Evol. 214(6):267-276) report mapping irx1a to LG16 on T51 panel, 5' of gene.
lpcat1 GENE 16 Dildrop et al., 2004 Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to  ...
irx2a GENE 16 Dildrop et al., 2004 Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to  ...
irx4a GENE 16 Dildrop et al., 2004 Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to  ...
z1837 SSLP 16 Feijoo et al., 2004 Feijoo et al. (2004 Dev. Genes Evol. 214(6):277-284) report mapping irx1a to LG16 using the T51 radiation hybrid panel.
z1837 SSLP 16 Joseph, 2004 Zebrafish-hampster somatic cell radiation hybrid analysis was used to map  ...
z7231 SSLP 16 Joseph, 2004 Zebrafish-hampster somatic cell radiation hybrid analysis was used to map  ...

OTHER MAPPING INFORMATION
Chr 16 Joseph, 2004 Zebrafish-hampster somatic cell radiation hybrid analysis was used to map irx1a to LG16 betweeen  ...
Chr 16 Dildrop et al., 2004 Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to map the irx1a, irx2a,  ...