ZFIN ID: ZDB-GENE-040426-1825

ZFIN ID: ZDB-GENE-040426-1825

Mapping Details

Gene Name:	iroquois homeobox 4a
Symbol:	irx4a

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	16	415,942 - 420,861	GRCz12tu
NCBI Map Viewer	16	415,942 - 420,861	GRCz12tu
Ensembl	16	378,766 - 383,664	GRCz11
NCBI Map Viewer	16	378,766 - 383,683	GRCz11
UCSC	16	-	GRCz11
Vega	16	287,438 - 292,337	GRCv10

Mapped Clones containing irx4a
CH1073-217P23	Chr: 16 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
el832	16	382,972 - 382,978	GRCz11	DIRECT		Farmer et al., 2021
sa17695	16	418,637	GRCz12tu	DIRECT		Sealy et al., 2025
	16	381,459	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	16	290,131	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	16	279,615	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa17778	16	418,637	GRCz12tu	DIRECT		Sealy et al., 2025
	16	381,459	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	16	290,131	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	16	279,615	Zv9	DIRECT		Busch-Nentwich et al., 2013
sa45557	16	418,039	GRCz12tu	DIRECT		Sealy et al., 2025
	16	380,861	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	16	289,533	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	16	280,213	Zv9	DIRECT		Busch-Nentwich et al., 2013
el832	9		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
sa17695	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	9		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
sa17778	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	9		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
sa45557	9		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	16		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage

GENETIC MAPPING PANELS: No data available

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
z8836	SSLP	16	22.0 cR	Dildrop et al., 2004	Dildrop and Ruther (2004, Dev. Genes Evol. 214(6):267-276) report mapping irx4a to LG16 on T51 panel.
irx1a	GENE	16		Dildrop et al., 2004	Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to ...
lpcat1	GENE	16		Dildrop et al., 2004	Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to ...
irx2a	GENE	16		Dildrop et al., 2004	Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to ...
nrsn1	GENE	16		Dildrop et al., 2004	Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to ...
fa11f12	EST	9		Feijoo et al., 2004	Feijoo et al. (2004 Dev. Genes Evol. 214(6):277-284) report mapping irx4a to LG9 using the T51 radiation hybrid panel.

Chr 16

Dildrop et al (Dev Genes Evol 214:267-276) used zebrafish genome sequence to map the irx1a, irx2a, ...