ZFIN ID: ZDB-GENE-990615-5
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Gene Name: T-box 16
Gene Symbol: tbx16
Sequence Ontology ID : SO:0000704

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Previous Names: cb103 (1), id:ibd2185 (1), spadetail, spt-1 (1), spt (1), wu:fa17g07 (1), ZF-SPT (1), zgc:109817

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(Including Attributions)
Location: Chr: 8 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Exhibits transcription regulatory region DNA binding activity; involved in several processes, including animal organ development, circulatory system development, and regulation of embryonic  ...
GENE EXPRESSION
All Expression Data: 87 figures from 60 publications
Directly Submitted Expression Data: 6 figures (10 images) from Thisse et al., 2001 [cb103]
  4 figures (10 images) from Kudoh et al., 2001 [ibd2185]
Wild-type Stages, Structures: Cleavage:64-cell (2.0h-2.25h) to Pharyngula:Prim-25 (36.0h-42.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
b104 Indel Unknown Premature Stop SPONTANEOUS
  • Zebrafish International Resource Center (ZIRC) (order this)
    • hi2109Tg Transgenic Insertion Unknown Unknown DNA
    hi3714Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • kt378b Point Mutation Acceptor Splice Site of Intron 1 Unknown ENU
    la016429Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • la026643Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • la026644Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • la029508Tg Transgenic Insertion Unknown Unknown DNA
    m423 Point Mutation Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
    • tbx16_unspecified Unspecified Unknown Unknown
    thp003 Point Mutation Unknown Unknown ENU
    tm41 Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
    • tq5 Unknown Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
    • Targeting reagents:
    PHENOTYPE
    Data: 55 figures from 30 publications
    Observed in:
    DISEASE ASSOCIATED WITH tbx16 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH tbx16 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process digestive tract development (more)
    Cellular Component nuclear chromatin (more)
    Molecular Function DNA binding (more)
    GO Terms (all 33)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001699 (1)
  • InterPro:IPR008967 (1)
  • InterPro:IPR018186 (1)
  • InterPro:IPR036960 (1)
    		•
  • PROSITE:PS01264 (1)
  • PROSITE:PS01283 (1)
  • PROSITE:PS50252 (1)
    		•
  • Pfam:PF00907 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA tbx16-201 (1) 4949
    Select Tool
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM tbx16
    MARKER RELATIONSHIPS
    tbx16Contained in: [BAC] CH73-313L22 (1) (order this)
    tbx16Encodes: [EST] cb103 (1) (order this), fa17g07 (1), ibd2185 (order this)
    [STS] chunp30288
    [cDNA] MGC:109817 (1) (order this), MGC:193075 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131058 (1) 2561bp
    Select Tool
    Genomic GenBank:CU459194 (1) 101559bp
    Select Tool
    Polypeptide UniProtKB:B8JL25 (1) 470aa
    Select Tool
    Sequence Clusters UniGene:75456 (1)
    Sequence Information (all 24)
    OTHER tbx16 GENE PAGES
  • Alliance (1)
  • Gene:30264 (1)
  • VEGA:OTTDARG00000028936 (1)
  • Ensembl(GRCz11):ENSDARG00000007329 (1)
    • ORTHOLOGY for tbx16 (Chr: 8)
    CITATIONS (250)