ZFIN ID: ZDB-GENE-980526-70
Gene Name: homeobox B5a
Gene Symbol: hoxb5a
Sequence Ontology ID : SO:0000704

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Previous Names: hox-2.1, hox-B5, hoxb5, wu:fc38c09, z-18, ZF-21, ZF21

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Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
GENE EXPRESSION
All Expression Data: 30 figures from 20 publications
Directly Submitted Expression Data: 6 figures (8 images) from Thisse et al., 2005 [eu480]
Wild-type Stages, Structures: Gastrula:Bud (10.0h-10.33h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
fh468Tg Transgenic Insertion Unknown Unknown DNA_AND_CRISPR
Targeting reagents:
PHENOTYPE No data available
DISEASE ASSOCIATED WITH hoxb5a HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH hoxb5a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process brain development (more)
Cellular Component nucleus (more)
Molecular Function DNA binding (more)
GO Terms (all 8)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR001827 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
  • InterPro:IPR017995 (1)
  • InterPro:IPR020479 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS00032 (1)
  • PROSITE:PS50071 (1)
  • Pfam:PF00046 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA hoxb5a-001 (1) 1790
    ottdart00000001811 (1) 1953
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDS
    Addgene
    CONSTRUCTS WITH SEQUENCES FROM hoxb5a No data available
    MARKER RELATIONSHIPS
    hoxb5aContained in: [BAC] CH211-72A16 (1) (order this)
    [PAC] BUSM1-254O17 (2) (order this)
    hoxb5aEncodes: [EST] eu480 (1), fc38c09
    [cDNA] MGC:86849 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131101 (1) 1800bp
    Genomic GenBank:BX927395 (1) 152987bp
    Select Tool
    Polypeptide UniProtKB:P09014 (1) 275aa
    Sequence Clusters UniGene:35792 (1)
    Sequence Information (all 25)
    OTHER hoxb5a GENE PAGES
  • Alliance (1)
  • Gene:30317 (1)
  • VEGA:OTTDARG00000001697 (1)
  • VEGA:OTTDARG00000019756 (1)
  • Ensembl(GRCz11):ENSDARG00000013057 (2)
  • ORTHOLOGY for hoxb5a (Chr: 3)
    CITATIONS (84)