ZFIN ID: ZDB-GENE-070112-2352
Gene Name: PAX3 and PAX7 binding protein 1
Gene Symbol: paxbp1    Nomenclature History

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Previous Name: zgc:158234

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 10 Mapping Details/Browsers
Description: Predicted to have RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II and positive regulation of transcription by RNA polymerase II. Predicted to localize to nucleus. Orthologous to human PAXBP1 (PAX3 and PAX7 binding protein 1).
Genome Resources: Alliance (1),  Gene:563266 (1),  Ensembl(GRCz11):ENSDARG00000062361 (2)
GENE EXPRESSION No data available
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa8635 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa34903 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH paxbp1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH paxbp1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of transcription, DNA-templated (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    aberrant processed transcript paxbp1-205 (1)    Ensembl 810
    mRNA paxbp1-202 (1)    Ensembl 2368
    paxbp1-204 (1)    Ensembl 3319
    ncRNA zgc:158234-003 (1)    Ensembl 1026
    zgc:158234-004 (1)    Ensembl 789
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM paxbp1 No data available
    MARKER RELATIONSHIPS
    paxbp1 Contained in: [BAC] CH211-69K21 (1)
    paxbp1 Encodes: [cDNA] MGC:158234 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001080183 (1) 2405 nt
    Genomic GenBank:AL929315 (1) 174143 nt
    Select Tool
    Polypeptide UniProtKB:E7F1H6 (1) 894 aa
    Sequence Information (all 14)
    ORTHOLOGY for paxbp1 ( Chr: 10 )
    CITATIONS (14)