ZFIN ID: ZDB-GENE-050203-2
Gene Name: protocadherin 1 alpha 6
Gene Symbol: pcdh1a6    Nomenclature History

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Previous Name: DrPcdh1ab4 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 10 Mapping Details/Browsers
Description: Predicted to have calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to localize to integral component of plasma membrane.
Genome Resources: Alliance (1),  Gene:497129 (1),  Ensembl(GRCz11):ENSDARG00000104598 (1)
GENE EXPRESSION
All Expression Data: text only from Emond et al., 2008
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa18005 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa27594 Point Mutation Unknown Premature Stop ENU
    Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-pcdh1a N/A 1
    MO2-pcdh1a N/A 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH pcdh1a6 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH pcdh1a6 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY No data available
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA zgc:123181-203 (1)    Ensembl 5299
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    Name Type Isotype Host Organism Assay Source Publications
    Ab1-pcdh1a polyclonal Rabbit IHC, WB 2
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM pcdh1a6 No data available
    MARKER RELATIONSHIPS
    pcdh1a6 Contained in: [BAC] CH211-179J10 (1), DKEY-17C10 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001024101 (1) 5297 nt
    Genomic GenBank:BX119910 (1) 199662 nt
    Select Tool
    Polypeptide UniProtKB:I6LCD9 (1) 184 aa
    Sequence Information (all 10)
    ORTHOLOGY for pcdh1a6 ( Chr: 10 )
    CITATIONS (14)