ZFIN ID: ZDB-GENE-050202-3
Gene Name: protocadherin 1 alpha 3
Gene Symbol: pcdh1a3    Nomenclature History

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Previous Names: DrPcdh1ab1 (1), pcdha3

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 10 Mapping Details/Browsers
Description: Predicted to have calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to localize to integral component of plasma membrane.
Genome Resources: Alliance (1),  Gene:497126 (1), 
GENE EXPRESSION
All Expression Data: text only from Emond et al., 2008
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la017449Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la017450Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa24869 Point Mutation Unknown Premature Stop ENU
    sa34891 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41643 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41644 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-pcdh1a N/A 1
    MO2-pcdh1a N/A 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH pcdh1a3 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH pcdh1a3 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cell adhesion (more)
    Cellular Component integral component of membrane (more)
    Molecular Function calcium ion binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA pcdh1a3-201 (1)    Ensembl 5392
    Browsers: NCBI
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    Name Type Isotype Host Organism Assay Source Publications
    Ab1-pcdh1a polyclonal Rabbit IHC, WB 2
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM pcdh1a3 No data available
    MARKER RELATIONSHIPS
    pcdh1a3 Contained in: [BAC] CH211-179J10 (1), DKEY-17C10 (1) (order this)
    pcdh1a3 Encodes: [cDNA] MGC:193719 (1), MGC:193728 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001024097 (1) 5390 nt
    Genomic GenBank:BX119910 (1) 199662 nt
    Select Tool
    Polypeptide UniProtKB:A0A0N4STS2 (1) 944 aa
    Sequence Information (all 23)
    ORTHOLOGY for pcdh1a3 ( Chr: 10 )
    CITATIONS (22)