Gene

puf60b

ID
ZDB-GENE-040625-116
Name
poly-U binding splicing factor b
Symbol
puf60b Nomenclature History
Previous Names
  • fe37c05
  • si:ch211-12p8.2
  • si:zc12p8.2
  • wu:fb33e11
  • wu:fe37c05
  • zgc:86806 (1)
Type
protein_coding_gene
Location
Chr: 7 Mapping Details/Browsers
Description
Predicted to have DNA binding activity and RNA binding activity. Predicted to be involved in RNA splicing; apoptotic process; and mRNA processing. Predicted to localize to nucleus. Is expressed in endocrine system; nervous system; pectoral fin; pharynx; and somite. Orthologous to human PUF60 (poly(U) binding splicing factor 60).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
13 figures from 2 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With puf60b Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
Verheij syndrome 615583
Associated With puf60b Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR000504 RNA recognition motif domain
Domain IPR003954 RNA recognition motif domain, eukaryote
Domain IPR034209 PUF60, RNA recognition motif 1
Domain IPR034211 PUF60, RNA recognition motif 2
Domain IPR034212 PUF60, RNA recognition motif 3
Family IPR006532 Poly-U binding splicing factor, PUF60-like
Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily IPR035979 RNA-binding domain superfamily
Domain Details Per Protein
Protein Length Nucleotide-binding alpha-beta plait domain superfamily Poly-U binding splicing factor, PUF60-like PUF60, RNA recognition motif 1 PUF60, RNA recognition motif 2 PUF60, RNA recognition motif 3 RNA-binding domain superfamily RNA recognition motif domain RNA recognition motif domain, eukaryote
UniProtKB:A0A1N8RFI4 500
UniProtKB:A0A1D5NSV9 250
UniProtKB:Q6IQE0 516
UniProtKB:A0A1D5NSB3 127
UniProtKB:A0A1N8PL29 517
UniProtKB:A0A1D5NS44 230
UniProtKB:A0A2U3TVF3 503
UniProtKB:A0A2R8RVR3 520
Transcripts
Genome Browsers
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations