ZFIN ID: ZDB-GENE-040426-2500
Gene Name: ligand of numb-protein X 2b
Gene Symbol: lnx2b
Sequence Ontology ID : SO:0000704

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Previous Names: lnx-l (1), id:ibd3184, lnx-like (1), zgc:85925 (1)

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(Including Attributions)
Location: Chr: 14 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 6 figures from 5 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:85925]
  2 figures (3 images) from Kudoh et al., 2001 [ibd3184]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
  anterior neural rod, blastoderm, blastodisc, blastomere (all 26) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la010014Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la012572Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la018980Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la018981Tg Transgenic Insertion Unknown Unknown DNA
    la027546Tg Transgenic Insertion Unknown Unknown DNA
    Targeting reagents: MO1-lnx2b (1), MO2-lnx2b (1), MO3-lnx2b (1), MO4-lnx2b (1)
    PHENOTYPE
    Data: 3 figures from Ro et al., 2009
    Observed in: whole organism
    DISEASE ASSOCIATED WITH lnx2b HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process protein K48-linked ubiquitination (more)
    Cellular Component cellular_component (more)
    Molecular Function ubiquitin-protein transferase activity (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001478 (1)
  • InterPro:IPR001841 (1)
  • InterPro:IPR013083 (1)
  • InterPro:IPR017907 (1)
  • InterPro:IPR027370 (1)
  • PROSITE:PS00518 (1)
  • PROSITE:PS50089 (1)
  • PROSITE:PS50106 (1)
  • Pfam:PF00595 (1)
  • Pfam:PF13445 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA lnx2b-001 (1) 3150
    ncRNA lnx2b-002 (1) 394
    mRNA lnx2b-003 (1) 572
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    SignaFish
    ANTIBODIESNo data available
    PLASMIDS
    Addgene
    CONSTRUCTS WITH SEQUENCES FROM lnx2b No data available
    MARKER RELATIONSHIPS
    lnx2bContained in: [BAC] CH211-231B5 (1) (order this), CH211-276G21 (1) (order this)
    lnx2bEncodes: [EST] ibd3184 (1) (order this)
    [cDNA] MGC:85925 (1) (order this), MGC:162185 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_212940 (1) 3201bp
    Genomic GenBank:AL935131 170938bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IET7 (1) 679aa
    Sequence Clusters UniGene:30341 (1)
    Sequence Information (all 26)
    OTHER lnx2b GENE PAGES
  • Alliance (1)
  • Gene:564464 (1)
  • VEGA:OTTDARG00000024013 (1)
  • Ensembl(GRCz10):ENSDARG00000071478 (1)
  • ORTHOLOGY for lnx2b (Chr: 14)
    CITATIONS (29)