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ZIRC
ZFIN ID: ZDB-GENE-040426-2009
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Gene Name: ubiquitin-like modifier activating enzyme 1
Gene Symbol: uba1
Sequence Ontology ID : SO:0000704

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Previous Names: ube1 (1), fb30f01, wu:fa01e08, wu:fb30f01, wu:fi21c11, wu:fj14g11, zgc:66143

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(Including Attributions)
Location: Chr: 23 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have ubiquitin activating enzyme activity. Involved in axonogenesis. Predicted to localize to the cytoplasm and nucleus. Orthologous to human UBA1 (ubiquitin like modifier activating  ...
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:66143]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la011054Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa15137 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa37679 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa37680 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa44999 Point Mutation Unknown Unknown ENU
    Targeting reagents:
    PHENOTYPE
    Data: Fig. 3 from Wishart et al., 2014
    Observed in:
    DISEASE ASSOCIATED WITH uba1 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Spinal muscular atrophy, X-linked 2, infantile 301830
    DISEASE ASSOCIATED WITH uba1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process axonogenesis (more)
    Cellular Component cytoplasm (more)
    Molecular Function ATP binding (more)
    GO Terms (all 13)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000011 (1)
  • InterPro:IPR000594 (1)
  • InterPro:IPR018075 (1)
  • InterPro:IPR018965 (1)
  • InterPro:IPR019572 (1)
  • InterPro:IPR032418 (1)
  • InterPro:IPR032420 (1)
  • InterPro:IPR033127 (1)
  • InterPro:IPR035985 (1)
  • InterPro:IPR038252 (1)
  • InterPro:IPR042063 (1)
  • InterPro:IPR042302 (1)
  • InterPro:IPR042449 (1)
    		•
  • PROSITE:PS00865 (1)
    		•
  • Pfam:PF00899 (1)
  • Pfam:PF09358 (1)
  • Pfam:PF10585 (1)
  • Pfam:PF16190 (1)
  • Pfam:PF16191 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA uba1-004 (1) 810
    Select Tool
    mRNA uba1-201 (1) 4223
    Select Tool
    uba1-202 (1) 862
    Select Tool
    uba1-204 (1) 398
    Select Tool
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM uba1 No data available
    MARKER RELATIONSHIPS
    uba1Contained in: [BAC] CH211-112C15 (1) (order this)
    uba1Encodes: [EST] fa01e08 (1), fb30f01 (1), fi21c11 (1), fj14g11 (1)
    [cDNA] MGC:66143 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_213062 (1) 4156bp
    Select Tool
    Genomic GenBank:CR339046 (1) 170974bp
    Select Tool
    Polypeptide UniProtKB:F1RCA1 (1) 1058aa
    Select Tool
    Sequence Clusters UniGene:75314 (1)
    Sequence Information (all 24)
    OTHER uba1 GENE PAGES
  • Alliance (1)
  • Gene:406335 (1)
  • VEGA:OTTDARG00000021287 (1)
  • Ensembl(GRCz11):ENSDARG00000037559 (2)
    • ORTHOLOGY for uba1 (Chr: 23)
    CITATIONS (28)