ZFIN Gene: uba1

ZFIN ID: ZDB-GENE-040426-2009

ZFIN ID: ZDB-GENE-040426-2009

Gene Name:	ubiquitin-like modifier activating enzyme 1
Gene Symbol:	uba1
Previous Names:	ube1 (1), fb30f01, wu:fa01e08, wu:fb30f01, wu:fi21c11, wu:fj14g11, zgc:66143
Location:	Chr: 23 Details
Nomenclature History

GENE EXPRESSION
All Expression Data:	2 figures from 2 publications
Directly Submitted Expression Data:	1 figure (1 image) from Thisse et al., 2004 [MGC:66143]
Wild-type Stages, Structures:	Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
	whole organism
Curated Microarray Expression:	GEO (1)

MUTANTS AND TARGETED KNOCKDOWNS

Alleles:	la011054Tg, sa15137
Knockdown reagents:	MO1-uba1 (1)

PHENOTYPE

Data:	Fig. 3 from Wishart et al., 2014
Observed in:	motor neuron axon, motor neuron collateral sprouting

Phenotype of Human Orthologue	OMIM Phenotype ID
Spinal muscular atrophy, X-linked 2, infantile	301830

GENE ONTOLOGY

GO Terms (all 11)

PROTEIN FAMILIES, DOMAINS AND SITES
InterPro:IPR000011 (1) InterPro:IPR000127 (1) InterPro:IPR000594 (1) InterPro:IPR009036 (1) InterPro:IPR016040 (1) InterPro:IPR018074 (1) InterPro:IPR018075 (1) InterPro:IPR018965 (1) InterPro:IPR019572 (1) InterPro:IPR023280 (1)	PROSITE:PS00865 (1)	Pfam:PF00899 (1) Pfam:PF02134 (1) Pfam:PF09358 (1) Pfam:PF10585 (1)

TRANSCRIPTS
Type	Name	Length (bp)	Analysis
mRNA	uba1-001 (1)	4223	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT Vega
	uba1-002 (1)	398	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT Vega
	uba1-003 (1)	862	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT Vega
ncRNA	uba1-004 (1)	810	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT Vega

GENE PRODUCT DESCRIPTION

ANTIBODIES No data available

PLASMIDS No data available

CONSTRUCTS WITH SEQUENCES FROM uba1 No data available

SEGMENT (CLONE AND PROBE) RELATIONSHIPS

uba1 Contained in:	[BAC] CH211-112C15 (1) (order this)
uba1 Encodes:	[EST] fa01e08 (1), fb30f01 (1), fi21c11 (1), fj14g11 (1) [cDNA] MGC:66143 (1) (order this)

SEQUENCE INFORMATION

Type	Accession #	Length (bp/aa)	Analysis
RNA	RefSeq:NM_213062 (1)	4156 bp	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT Vega
Genomic	GenBank:CR339046 (1)	170974 bp	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:F1RCA1 (1)	1058 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast Vega Protein Blast
Sequence Clusters	UniGene:75314 (1)

OTHER uba1 GENE PAGES

Gene:406335 (1)

VEGA:OTTDARG00000021287 (1)

Ensembl(Zv9):ENSDARG00000037559 (1)

ORTHOLOGY

CITATIONS (24)