ZFIN ID: ZDB-GENE-030910-3
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Gene Name: cadherin 17, LI cadherin (liver-intestine)
Gene Symbol: cdh17
Sequence Ontology ID : SO:0000704

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Previous Names: cb903 (1), fb65d02, wu:fb65d02 (1)

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(Including Attributions)
Location: Chr: 16 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have several functions, including cadherin binding activity, calcium ion binding activity, and cytoskeletal protein binding activity; involved in pronephros development; predicted to  ...
GENE EXPRESSION
All Expression Data: 60 figures from 35 publications
Directly Submitted Expression Data: 5 figures (5 images) from Thisse et al., 2001 [cb903]
Wild-type Stages, Structures: Segmentation:5-9 somites (11.66h-14.0h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa11932 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa14279 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa32091 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa36153 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH cdh17 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH cdh17 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process pronephros development (more)
    Cellular Component integral component of membrane (more)
    Molecular Function calcium ion binding (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR002126 (1)
  • InterPro:IPR015919 (1)
  • InterPro:IPR020894 (1)
    		•
  • PROSITE:PS00232 (1)
    		•
  • Pfam:PF00028 (1)
    		•
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA cdh17-002 (1) 634
    Select Tool
    mRNA cdh17-201 (1) 3326
    Select Tool
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM cdh17
    MARKER RELATIONSHIPS
    cdh17Contained in: [BAC] CH211-79L20 (1) (order this)
    cdh17Encodes: [EST] cb903 (1) (order this), fb65d02 (1)
    [cDNA] MGC:55248 (1) (order this), MGC:77579 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_194422 (1) 3373bp
    Select Tool
    Genomic GenBank:BX511010 156317bp
    Select Tool
    Polypeptide UniProtKB:F1RD80 (1) 868aa
    Select Tool
    Sequence Clusters UniGene:77182 (1)
    Sequence Information (all 21)
    OTHER cdh17 GENE PAGES
  • Alliance (1)
  • Gene:378452 (1)
  • VEGA:OTTDARG00000020918 (1)
  • Ensembl(GRCz11):ENSDARG00000005112 (2)
    • ORTHOLOGY for cdh17 (Chr: 16)
    CITATIONS (81)