ZFIN ID: ZDB-GENE-030131-9807
Gene Name: collectin sub-family member 12
Gene Symbol: colec12
Sequence Ontology ID : SO:0000704

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: zCL-P1 (1), cb377 (1), hm:zeh0853, id:ibd2826, sb:cb377, si:ch211-212m21.5 (1), zeh0853

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Location: Chr: 2 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have low-density lipoprotein particle binding activity and signaling pattern recognition receptor activity; involved in vasculogenesis; predicted to localize to the extracellular matrix  ...
GENE EXPRESSION
All Expression Data: 10 figures from 3 publications
Directly Submitted Expression Data: 6 figures (12 images) from Thisse et al., 2001 [cb377]
  3 figures (5 images) from Kudoh et al., 2001 [ibd2826]
Wild-type Stages, Structures: Cleavage:4-cell (1.0h-1.25h) to Juvenile:Days 45-89 (45d-90d, 14 mm, 12 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa39850 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: Fig. 4 from Fukuda et al., 2011
    Observed in:
    DISEASE ASSOCIATED WITH colec12 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH colec12 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process vasculogenesis (more)
    Cellular Component collagen trimer (more)
    Molecular Function carbohydrate binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001304 (1)
  • InterPro:IPR008160 (1)
  • InterPro:IPR016186 (1)
  • InterPro:IPR016187 (1)
  • InterPro:IPR018378 (1)
  • PROSITE:PS00615 (1)
  • PROSITE:PS50041 (1)
  • Pfam:PF00059 (1)
  • Pfam:PF01391 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA colec12-201 (1) 4850
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM colec12 No data available
    MARKER RELATIONSHIPS
    colec12Contained in: [BAC] CH211-212M21 (1) (order this)
    colec12Encodes: [EST] cb377 (1) (order this), ibd2826 (order this), zeh0853
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001122840 (1) 4850bp
    Genomic GenBank:BX927088 (1) 201361bp Blast at MegaBLAST
    Polypeptide UniProtKB:A5PMY6 (1) 720aa
    Sequence Clusters UniGene:75423 (1)
    Sequence Information (all 20)
    OTHER colec12 GENE PAGES
  • Alliance (1)
  • Gene:558942 (1)
  • VEGA:OTTDARG00000024571 (1)
  • Ensembl(GRCz11):ENSDARG00000061140 (2)
  • ORTHOLOGY for colec12 (Chr: 2)
    CITATIONS (19)