ZFIN ID: ZDB-GENE-010816-1
Gene Name: ornithine decarboxylase 1
Gene Symbol: odc1
Sequence Ontology ID : SO:0000704

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Previous Names: odc, CHUNP6922, fc54f04, fi06d08, ornithine decarboxylase, wu:fc54f04 (1), wu:fi06d08 (1)

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(Including Attributions)
Location: Chr: 17 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 16 figures from 15 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55204]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi1841bTg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa9608 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa11170 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE
    Data: 2 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH odc1 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    colorectal cancer {Colonic adenoma recurrence, reduced risk of} 114500
    DISEASE ASSOCIATED WITH odc1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process eye photoreceptor cell development (more)
    Cellular Component cytoplasm (more)
    Molecular Function catalytic activity (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000183 (1)
  • InterPro:IPR002433 (1)
  • InterPro:IPR009006 (1)
  • InterPro:IPR022643 (1)
  • InterPro:IPR022644 (1)
  • InterPro:IPR022653 (1)
  • InterPro:IPR022657 (1)
  • InterPro:IPR029066 (1)
  • PROSITE:PS00878 (1)
  • PROSITE:PS00879 (1)
  • Pfam:PF00278 (1)
  • Pfam:PF02784 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA odc1-001 (1) 2140
    odc1-002 (1) 734
    odc1-003 (1) 545
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM odc1 No data available
    MARKER RELATIONSHIPS
    odc1Contained in: [Fosmid] CH1073-378J2 (1) (order this)
    odc1Encodes: [BAC END] zk16b16.t7
    [EST] fc54f04, fi06d08
    [cDNA] MGC:55204 (1) (order this), MGC:77567 (1) (order this), MGC:113953 (1), MGC:192430 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131801 (1) 2154bp
    Genomic GenBank:CU638706 (1) 40247bp
    Select Tool
    Polypeptide UniProtKB:Q9DGJ4 (1) 461aa
    Sequence Clusters UniGene:78653 (1)
    Sequence Information (all 31)
    OTHER odc1 GENE PAGES
  • Alliance (1)
  • Gene:114426 (1)
  • VEGA:OTTDARG00000034974 (1)
  • Ensembl(GRCz11):ENSDARG00000007377 (2)
  • ORTHOLOGY for odc1 (Chr: 17)
    CITATIONS (74)