header logo image header logo text
Downloads Login
Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-010816-1
Gene Name: ornithine decarboxylase 1
Gene Symbol: odc1
Sequence Ontology ID : SO:0001217

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: odc, CHUNP6922, fc54f04, fi06d08, ornithine decarboxylase, wu:fc54f04 (1), wu:fi06d08 (1)

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Location: Chr: 17 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have ornithine decarboxylase activity. Involved in eye photoreceptor cell development. Predicted to localize to the cytoplasm. Orthologous to human ODC1 (ornithine decarboxylase 1).
GENE EXPRESSION
All Expression Data: 16 figures from 15 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55204]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi1841bTg Transgenic Insertion Intron 1 Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa9608 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa11170 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE
    Data: 2 figures from 2 publications
    Observed in:
    DISEASE ASSOCIATED WITH odc1 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    colorectal cancer {Colonic adenoma recurrence, reduced risk of} 114500
    DISEASE ASSOCIATED WITH odc1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process eye photoreceptor cell development (more)
    Cellular Component cytoplasm (more)
    Molecular Function catalytic activity (more)
    GO Terms (all 6)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA odc1-201 (1) 545
    odc1-202 (1) 2140
    odc1-203 (1) 734
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM odc1 No data available
    MARKER RELATIONSHIPS
    odc1 Contained in: [Fosmid] CH1073-378J2 (1) (order this)
    odc1 Encodes: [BAC END] zk16b16.t7
    [EST] fc54f04, fi06d08
    [cDNA] MGC:55204 (1) (order this), MGC:77567 (1) (order this), MGC:113953 (1), MGC:192430 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131801 (1) 2154 bp
    Genomic GenBank:CU638706 (1) 40247 bp
    Select Tool
    Polypeptide UniProtKB:Q9DGJ4 (1) 461 aa
    Sequence Clusters UniGene:78653 (1)
    Sequence Information (all 31)
    ORTHOLOGY for odc1 ( Chr: 17 )
    CITATIONS (79)