ZFIN ID: ZDB-GENE-010328-5
Gene Name: claudin e
Gene Symbol: cldne
Sequence Ontology ID : SO:0000704

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Previous Names: cb84 (1), fb16e12, wu:fb16e12 (1)

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(Including Attributions)
Location: Chr: 15 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 22 figures from 5 publications
Directly Submitted Expression Data: 12 figures (25 images) from Rauch et al., 2003 [fb16e12]
  6 figures (8 images) from Thisse et al., 2001 [cb84]
Wild-type Stages, Structures: Cleavage:2-cell (0.75h-1.0h) to Adult (90d-730d, breeding adult)
  blastomere, EVL, gill, inner ear (all 16) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Targeting reagents: MO1-cldne (1), MO2-cldne (1)
PHENOTYPE
Data: 5 figures from Siddiqui et al., 2010
Observed in: dorsal convergence, epiboly involved in gastrulation with mouth forming second, EVL anatomical margin, EVL blastoderm cell (all 5) expand
DISEASE ASSOCIATED WITH cldne HUMAN ORTHOLOGNo data available
GENE ONTOLOGY
Ontology GO Term
Biological Process epiboly involved in gastrulation with mouth forming second (more)
Cellular Component bicellular tight junction (more)
Molecular Function structural molecule activity (more)
GO Terms (all 7)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR004031 (1)
  • InterPro:IPR005411 (1)
  • InterPro:IPR006187 (1)
  • InterPro:IPR017974 (1)
  • PROSITE:PS01346 (1)
  • Pfam:PF00822 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA cldne-001 (1) 2083
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM cldne No data available
    MARKER RELATIONSHIPS
    cldneContained in: [BAC] CH211-235M3 (1) (order this)
    cldneEncodes: [EST] cb84 (1) (order this), fb16e12 (1) (order this)
    [cDNA] MGC:77738 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131765 (1) 1955bp
    Genomic GenBank:CR382327 (1) 151282bp
    Select Tool
    Polypeptide UniProtKB:Q90XR9 (1) 209aa
    Sequence Clusters UniGene:3454 (1)
    Sequence Information (all 14)
    OTHER cldne GENE PAGES
  • Alliance (1)
  • Gene:81584 (1)
  • VEGA:OTTDARG00000020672 (1)
  • Ensembl(GRCz10):ENSDARG00000043128 (1)
  • ORTHOLOGY for cldne (Chr: 15)
    CITATIONS (34)