ZFIN ID: ZDB-GENE-000823-5
Gene Name: homeobox A1a
Gene Symbol: hoxa1a
Sequence Ontology ID : SO:0000704

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Previous Names: Hox-a1 (1), id:ibd3526 (1), z-4

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(Including Attributions)
Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 12 figures from 7 publications
Directly Submitted Expression Data: 1 figure (2 images) from Kudoh et al., 2001 [ibd3526]
  6 figures (14 images) from Thisse et al., 2005 [eu257]
Wild-type Stages, Structures: Gastrula:Shield (6.0h-8.0h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTSNo data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH hoxa1a HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
Athabaskan brainstem dysgenesis syndrome Athabaskan brainstem dysgenesis syndrome 601536
Bosley-Salih-Alorainy syndrome 601536
DISEASE ASSOCIATED WITH hoxa1a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process multicellular organism development (more)
Cellular Component nucleus (more)
Molecular Function DNA binding (more)
GO Terms (all 5)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
  • InterPro:IPR020479 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS50071 (1)
  • Pfam:PF00046 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA hoxa1a-001 (1) 1441
    hoxa1a-002 (1) 885
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDS
    Addgene
    CONSTRUCTS WITH SEQUENCES FROM hoxa1a No data available
    MARKER RELATIONSHIPS
    hoxa1aContained in: [BAC] DKEY-25E11 (1) (order this)
    [PAC] BUSM1-227P06 (1) (order this)
    hoxa1aEncodes: [EST] eu257 (1), ibd3526 (1) (order this)
    [cDNA] MGC:194117 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131536 (1) 990bp
    Genomic GenBank:CR382300 (1) 202006bp Blast at MegaBLAST
    Polypeptide UniProtKB:B3DHB1 (1) 329aa
    Sequence Clusters UniGene:83046 (1)
    Sequence Information (all 29)
    OTHER hoxa1a GENE PAGES
  • Alliance (1)
  • Gene:58051 (1)
  • VEGA:OTTDARG00000015149 (1)
  • Ensembl(GRCz11):ENSDARG00000104307 (1)
  • ORTHOLOGY for hoxa1a (Chr: 19)
    CITATIONS (46)