Publication	Data		Fish	Anatomy
Allen et al., 2017	Fig. 5		gli1ts269/ts269; rw0Tg	cranial motor neuron absent, abnormal feeding behavior decreased occurrence, abnormal
Milla et al., 2012	Fig. 4		gli1ts269/ts269	notochord neo1a expression absent, abnormal retinal ganglion cell layer neo1a expression absent, abnormal
	Fig. 5		gli1ts269/ts269	eye myca expression absent, abnormal liver myca expression absent, abnormal optic tectum myca expression absent, abnormal
Wiweger et al., 2012	Fig. 4		gli1tm276b/tm276b	ceratobranchial 5 bone decreased length, abnormal ceratobranchial 5 bone has fewer parts of type ceratobranchial 5 tooth, abnormal
Cox et al., 2011	Fig. 9		gli1ts269/ts269; sl1Tg	glossopharyngeal ganglion sensory neuron axon guidance decreased occurrence, abnormal vagal ganglion sensory neuron axon guidance decreased occurrence, abnormal
Schwend et al., 2010	Fig. 1		gli1ts269/ts269	post-vent region curved ventral, abnormal somite U-shaped, abnormal
Devine et al., 2009	Fig. 3		gli1ts269/ts269	adenohypophyseal placode decreased size, abnormal adenohypophysis morphogenesis process quality, abnormal
	Fig. 4		WT + MO1-gli1 ,   gli1ts269/ts269	adrenocorticotropic hormone secreting cell decreased amount, abnormal corticotropin hormone secreting cell differentiation process quality, abnormal prolactin secreting cell decreased amount, abnormal prolactin secreting cell differentiation process quality, abnormal somatotropin secreting cell decreased amount, abnormal somatotropin secreting cell differentiation process quality, abnormal
	Fig. 5		WT + MO1-gli1	adenohypophysis morphogenesis process quality, abnormal adenohypophysis physical object quality, abnormal
Lunt et al., 2009	Fig. 7		gli1ts269/ts269	ethmoid cartilage decreased width, abnormal trabecula cranii fused with trabecula cranii, abnormal
Schafer et al., 2007	Fig. 4		gli1te370a/+ ,   gli1te370a/te370a	floor plate formation disrupted, abnormal lateral floor plate composition, abnormal
	Fig. 5		gli1te370a/+ ,   gli1te370a/te370a	floor plate formation disrupted, abnormal lateral floor plate composition, abnormal
Phenotype Annotation (1994-2006)	Fig. for (te370a)		gli1te370a/te370a	brain quality, abnormal central canal quality, abnormal eye quality, abnormal floor plate quality, abnormal nervous system quality, abnormal neural tube quality, abnormal pharyngeal arch 3-7 skeleton quality, abnormal post-vent region curved, abnormal retinal ganglion cell axon guidance quality, abnormal sensory system quality, abnormal whole organism lethal (sensu genetics), abnormal whole organism shape, abnormal
	Fig. for (tm276b)		gli1tm276b/tm276b	brain quality, abnormal central canal quality, abnormal eye quality, abnormal floor plate quality, abnormal nervous system quality, abnormal neural tube quality, abnormal pharyngeal arch 3-7 skeleton quality, abnormal post-vent region curved, abnormal retinal ganglion cell axon guidance quality, abnormal sensory system quality, abnormal whole organism lethal (sensu genetics), abnormal whole organism shape, abnormal
	Fig. for (ts269)		gli1ts269/ts269	brain quality, abnormal central canal quality, abnormal eye quality, abnormal floor plate quality, abnormal nervous system quality, abnormal neural tube quality, abnormal pharyngeal arch 3-7 skeleton quality, abnormal post-vent region curved, abnormal retinal ganglion cell axon guidance quality, abnormal sensory system quality, abnormal whole organism lethal (sensu genetics), abnormal whole organism shape, abnormal
Karlstrom et al., 2003	Fig. 1		gli1ts269/ts269	somite U-shaped, abnormal whole organism curved ventral, abnormal
Chandrasekhar et al., 1999	Fig. 1		gli1te370a/te370a	abducens motor nucleus absent, abnormal cranial nerve IX absent, abnormal facial nerve motor nucleus absent, abnormal motor nucleus of vagal nerve absent, abnormal trigeminal motor nucleus absent, abnormal
	Fig. 2		gli1te370a/te370a	motor nucleus of vagal nerve absent, abnormal primary motor neuron axon misrouted, abnormal secondary motor neuron axon misrouted, abnormal
	Fig. 4		gli1te370a/te370a	abducens motor nucleus absent, abnormal facial nerve motor nucleus absent, abnormal
Brand et al., 1996	Fig. 2		gli1te370a/te370a ,   gli1tm276b/tm276b ,   gli1ts269/ts269	eye decreased distance eye, abnormal eye mislocalised medially, abnormal
	Fig. 3		gli1te370a/te370a ,   gli1tm276b/tm276b ,   gli1ts269/ts269	floor plate decreased size, abnormal floor plate formation disrupted, abnormal
	Fig. 7		gli1ts269/ts269	optic chiasm malformed, abnormal retinal ganglion cell axon guidance disrupted, abnormal
	Fig. 8		gli1te370a/te370a ,   gli1tm276b/tm276b ,   gli1ts269/ts269	ethmoid cartilage hypoplastic, abnormal parachordal cartilage fused with parachordal cartilage, abnormal trabecula cranii fused with trabecula cranii, abnormal
	Table 1		gli1te370a/te370a ,   gli1tm276b/tm276b ,   gli1ts269/ts269	abducens motor nucleus absent, abnormal central canal morphology, abnormal central nervous system has fewer parts of type white matter, abnormal pharyngeal arch 3-7 skeleton morphology, abnormal post-vent region curved ventral, abnormal retinal ganglion cell axon guidance disrupted, abnormal whole organism shape, abnormal whole organism viability, abnormal
Karlstrom et al., 1996	Fig. 1		gli1te370a/te370a	retinal ganglion cell axon guidance process quality, abnormal retinal ganglion cell axon ipsilateral to eye, abnormal retinal ganglion cell axon misrouted, abnormal
	Fig. 2		gli1te370a/te370a	retinal ganglion cell axon displaced to diencephalon, abnormal retinal ganglion cell axon ipsilateral to eye, abnormal
	Fig. 4		gli1te370a/te370a	retinal ganglion cell axon guidance process quality, abnormal retinal ganglion cell axon ipsilateral to eye, abnormal retinal ganglion cell axon misrouted, abnormal
	Table 1		gli1tm276b/tm276b ,   gli1ts269/ts269	postoptic commissure aplastic, abnormal retinal ganglion cell axon displaced to diencephalon, abnormal retinal ganglion cell axon guidance process quality, abnormal retinal ganglion cell axon ipsilateral to eye, abnormal retinal ganglion cell axon misrouted, abnormal
	text only		gli1te370a/te370a	postoptic commissure aplastic, abnormal
Piotrowski et al., 1996	Table 2		gli1te370a/te370a ,   gli1tm276b/tm276b ,   gli1ts269/ts269	chondrocranium morphology, abnormal cranial neural crest cell mislocalised ventrally, abnormal