ZFIN ID: ZDB-GENE-980526-112

Mapping Details

Gene Name:	ISL LIM homeobox 1a
Symbol:	isl1a

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	5	41,659,642 - 41,665,109	GRCz12tu
NCBI Map Viewer	5	41,659,642 - 41,665,109	GRCz12tu
Ensembl	5	40,728,613 - 40,734,045	GRCz11
NCBI Map Viewer	5	40,728,613 - 40,734,045	GRCz11
UCSC	5	-	GRCz11
Vega	5	40,128,460 - 40,133,892	GRCv10

Mapped Clones containing isl1a
CH211-219F7	Chr: 5 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
rw436	5	40,730,696	GRCz11	DIRECT		Tanaka et al., 2011
sa29	5	40,732,319	GRCz11	DIRECT		de Pater et al., 2009
rw436	5		GRCz11	OTHER_MAPPING	linkagesDirectMem2
	5		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	5		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	5		GRCz11	OTHER_MAPPING	linkagesDirectMem1
sa29	5		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	5		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
5	108.3 cM	islet1	Mother of Pearl (MOP)	Postlethwait, John H.	Data
5	199.13 cR	islet1	Loeb/NIH/5000/4000 (LN54)	Dawid, Igor B.	Data
5	86.5 cM	isl1	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

Genomic Feature rw436 is an allele of isl1a

Marker	Type	Chr	Distance	Publication / Person	Comments
z9871	SSLP	5	0.42 cM	Tanaka et al., 2011	Tanaka, H. et al. (2011, Dev. Dyn. 240(1):9-22) mapped rw436 to Chr. 5 using SSLP markers.
z6094	SSLP	5	0.84 cM	Tanaka et al., 2011	Tanaka, H. et al. (2011, Dev. Dyn. 240(1):9-22) mapped rw436 to Chr. 5 using SSLP markers.

Primer Sets:
Strain	Bandsize	Restriction Enzyme	Annealing Temperature [C]
SJD	1110	MnlI	36.0
Forward Primer	AGAGTGACATCGACCAGCCT
Reverse Primer	GGCGTTGTTCTTCCATCAGT

Genomic Feature rw436 is an allele of isl1a