ZFIN ID: ZDB-GENE-990415-8

ZFIN ID: ZDB-GENE-990415-8

Mapping Details

Gene Name:	paired box 2a
Symbol:	pax2a

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	13	33,160,598 - 33,194,013	GRCz12tu
NCBI Map Viewer	13	33,160,598 - 33,194,013	GRCz12tu
Ensembl	13	29,770,837 - 29,803,764	GRCz11
NCBI Map Viewer	13	29,770,944 - 29,804,357	GRCz11
UCSC	13	-	GRCz11
Vega	13	29,640,387 - 29,673,314	GRCv10

Mapped Clones containing pax2a
DKEY-254E7	Chr: 13 Details
CH73-104D2	Chr: 13 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	Citations
cu17	13	29,773,189	GRCz11	DIRECT	Charlton-Perkins et al., 2019
sa11077	13	33,167,969	GRCz12tu	DIRECT	Sealy et al., 2025
	13	29,778,313	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	13	29,647,863	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	13	30,001,915	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa22324	13	33,167,970	GRCz12tu	DIRECT	Sealy et al., 2025
	13	29,778,314	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	13	29,647,864	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	13	30,001,916	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa24936	13	33,167,978	GRCz12tu	DIRECT	Sealy et al., 2025
	13	29,778,322	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	13	29,647,872	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	13	30,001,924	Zv9	DIRECT	Busch-Nentwich et al., 2013
szu2	13	29,771,465 - 29,771,470	GRCz11	DIRECT	Pachoensuk et al., 2020
th44	13	29,778,647	GRCz11	DIRECT	Brand et al., 1996
tm243a	13	29,774,007	GRCz11	DIRECT	Lun et al., 1998
tu29a	13	29,778,322	GRCz11	DIRECT	Lun et al., 1998
ty22b	13	29,778,322	GRCz11	DIRECT	Lun et al., 1998
ty31a	13	29,774,023	GRCz11	DIRECT	Lun et al., 1998
b593	13		GRCz11	OTHER_MAPPING	ZFIN Curated Data
cu17	13		GRCz11	OTHER_MAPPING	ZFIN Curated Data
pax2a_unspecified	13		GRCz11	OTHER_MAPPING	ZFIN Curated Data
rk9	13		GRCz11	OTHER_MAPPING	ZFIN Curated Data
szu2	13		GRCz11	OTHER_MAPPING	ZFIN Curated Data
tb21	13		GRCz11	OTHER_MAPPING	ZFIN Curated Data
th44	13		GRCz11	OTHER_MAPPING	ZFIN Curated Data
tm243a	13		GRCz11	OTHER_MAPPING	ZFIN Curated Data
tu29a	13		GRCz11	OTHER_MAPPING	ZFIN Curated Data
tud42Tg	13		GRCz11	OTHER_MAPPING	ZFIN Curated Data
tud43Tg	13		GRCz11	OTHER_MAPPING	ZFIN Curated Data
tud53Tg	13		GRCz11	OTHER_MAPPING	ZFIN Curated Data
ty22b	13		GRCz11	OTHER_MAPPING	ZFIN Curated Data
ty31a	13		GRCz11	OTHER_MAPPING	ZFIN Curated Data
umn100	13		GRCz11	OTHER_MAPPING	ZFIN Curated Data
umn101	13		GRCz11	OTHER_MAPPING	ZFIN Curated Data
uy221Tg	13		GRCz11	OTHER_MAPPING	ZFIN Curated Data

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
13	102.9 cM	paxb	Mother of Pearl (MOP)	Postlethwait, John H.	Data
13	338.43 cR	paxb	Loeb/NIH/5000/4000 (LN54)	Dawid, Igor B.	Data
13	2466.0 cR	pax2a	Goodfellow T51 (T51)	Geisler, Robert	Data
13	60.7 cM	pax2a	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
neurog3	GENE	13	1.3 cM	Correa et al., 2005
fgf8a	GENE	13	1.3 cM	Correa et al., 2005
bmpr1aa	GENE	13	2.6 cM	Correa et al., 2005
chuk	GENE	13	1.3 cM	Correa et al., 2005
wnt8b	GENE	13	0.1 cM	Correa et al., 2005
mgo	GENE	13	0.0 cM	Shima et al., 2009	Shima et al. (2009) lined the mgo locus to LG13. mgo heterozygous (AB* ...

OTHER MAPPING INFORMATION: No data available

Genomic Feature pax2a_unspecified is an allele of pax2a