Transcript

ottdart00000055516

ID

ZDB-TSCRIPT-141209-2922

Name

ottdart00000055516 Nomenclature History

Previous Names

None

Transcript Type

ncRNA

Annotation Status

retained intron

Annotation Method

Ensembl

Associated With Genes

srrm1 (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000148483 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|ENSDART00000148483.2|gene_biotype:protein_coding|ENSDARG00000001244.12 transcript_biotype:retained_intron gene_symbol:srrm1 cdna chromosome:GRCz11:17:25431410:25432760:1
TGCATGCTCAGAGGGAGTTTATACACTTTAGAAGTGTCCT
TGATTTTAACTTTTTTCATTCAATTGGTTTAAAAGTAAAA
AAGAAAATAAAATAAATGCATAACATTCTGTTGTGGCTGT
TGGTTATAGAAACCATTTTGAGGCCCGCAGGTACTGGGCT
CTTGTTGAAAAGCAGCTGTTTACTGATGTTCAGGAAAGGA
AGGTCTAGGTAGACTATCAGAATTCTGTGCTCTTGTTCGG
TGTCAGTATTAACTGCTTGGTTTTCTCCCCTTCTCTCTTC
CTCCCCTGCTGTTTGTGTTGCAGAATCCAGATGGAAAGAT
GATGCAGATTAATTTGACAGGTTTTCTGAATGGAAAGAAT
GCTCGGGAGTTCATGAAAGACCTCTGGCCACTGTTGTTAA
GCGCCCAGGAGAACATTGCCGGTATCCCATCAGCCTTCCT
GGAGCAGAAGAAAGAGGAGATCAAACAGAGACAGATTGAA
CAGGAGAAACTCGCCTCTCTAAAAAAAGTAGATGAAGATA
AAAGGGAGAAGGAGAACAAAGAAAGAGCTCAGTCAAAAAG
CCCTAAACGGAGAAAGTCTCGCTCCCCTGTGAAGCGTGAT
CGTAAATCCAGTCCTTCTCGTTCTCGCTCTCCTCGACGAA
AAATAAGCCCAGCCGCTTCACCACCTTCCAGTCCACCCAA
TCATAAAGAAGAACCGAAGCGAGAACCAGACCAGTCAGAG
AGCTCTAAACCAGAGCCACTCATTCAGGAAGCTTCATCTA
CCAGTGATCTTGTGACTGAGATGAAGCCGGACTCAGTGTC
AGAGCCTGTGAAAGAGTCCTCTCCAGACAAAACG

OTTDART00000055516 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000055516|OTTDARG00000038724|ZDB-GENE-040426-2789 srrm1|no_translation srrm1-006 LG_ CU972452.10 Danio rerio protein_coding KNOWN, 834 bp
TGCATGCTCAGAGGGAGTTTATACACTTTAGAAGTGTCCT
TGATTTTAACTTTTTTCATTCAATTGGTTTAAAAGTAAAA
AAGAAAATAAAATAAATGCATAACATTCTGTTGTGGCTGT
TGGTTATAGAAACCATTTTGAGGCCCGCAGGTACTGGGCT
CTTGTTGAAAAGCAGCTGTTTACTGATGTTCAGGAAAGGA
AGGTCTAGGTAGACTATCAGAATTCTGTGCTCTTGTTCGG
TGTCAGTATTAACTGCTTGGTTTTCTCCCCTTCTCTCTTC
CTCCCCTGCTGTTTGTGTTGCAGAATCCAGATGGAAAGAT
GATGCAGATTAATTTGACAGGTTTTCTGAATGGAAAGAAT
GCTCGGGAGTTCATGAAAGACCTCTGGCCACTGTTGTTAA
GCGCCCAGGAGAACATTGCCGGTATCCCATCAGCCTTCCT
GGAGCAGAAGAAAGAGGAGATCAAACAGAGACAGATTGAA
CAGGAGAAACTCGCCTCTCTAAAAAAAGTAGATGAAGATA
AAAGGGAGAAGGAGAACAAAGAAAGAGCTCAGTCAAAAAG
CCCTAAACGGAGAAAGTCTCGCTCCCCTGTGAAGCGTGAT
CGTAAATCCAGTCCTTCTCGTTCTCGCTCTCCTCGACGAA
AAATAAGCCCAGCCGCTTCACCACCTTCCAGTCCACCCAA
TCATAAAGAAGAACCGAAGCGAGAACCAGACCAGTCAGAG
AGCTCTAAACCAGAGCCACTCATTCAGGAAGCTTCATCTA
CCAGTGATCTTGTGACTGAGATGAAGCCGGACTCAGTGTC
AGAGCCTGTGAAAGAGTCCTCTCCAGACAAAACG

Related Transcripts

Transcripts related to srrm1

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	srrm1-203 (1) Ensembl	Ensembl	889 nt	Select Tool
aberrant processed transcript	srrm1-205 (1) Ensembl	Ensembl	803 nt	Select Tool
mRNA	srrm1-201 (1) Ensembl	Ensembl	3,480 nt	Select Tool
mRNA	srrm1-204 (1) Ensembl	Ensembl	3,517 nt	Select Tool
mRNA	srrm1-208 (1) Ensembl	Ensembl	848 nt	Select Tool
ncRNA	ottdart00000055512 (1) Ensembl	Ensembl	567 nt	Select Tool
ncRNA	ottdart00000055514 (1) Ensembl	Ensembl	612 nt	Select Tool
ncRNA	ottdart00000055516	Ensembl	834 nt

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations