Transcript

srrm1-205

ID

ZDB-TSCRIPT-141209-1701

Name

srrm1-205 Nomenclature History

Previous Names

ottdart00000055515

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

srrm1 (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000149557 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|ENSDART00000149557.3|gene_biotype:protein_coding|ENSDARG00000001244.12 transcript_biotype:nonsense_mediated_decay gene_symbol:srrm1 cdna chromosome:GRCz11:17:25426131:25437273:1
AGAAATGGACGCGGGTTTTTTCCGCGGCACCAGTGCGGAG
CAGGATAACCGCTTCAGCAACAAACACAAGAAACTCTTGA
AGCAGCTGAAGTTTGCAGAATGTCTGGAGAAAAAGGTGGA
TATGACCAAGGTCAACCTGGAAGTCATCAAGCCCTGGATC
ACCCAGCGTGTGACAGAGATACTTGGCTTCGAGGATGATG
TGGTCATTGAATTTGTCTTTAACCAGCTGGAGGAAAAGAA
TCCAGATGGAAAGATGATGCAGATTAATTTGACAGGTTTT
CTGAATGGAAAGAATGCTCGGGAGTTCATGAAAGACCTCT
GGCCACTGTTGTTAAGCGCCCAGGAGAACATTGCCGGTAT
CCCATCAGCCTTCCTGGAGCAGAAGAAAGAGGAGATCAAA
CAGAGACAGATTGAACAGGAGAAACTCGCCTCTCTAAAAA
AAGTAGATGAAGATAAAAGGGAGAAGGAGAACAAAGAAAG
AGCTCAGTCAAAAAGCCCTAAACGGAGAAAGTCTCGCTCC
CCTGTGAAGCGTGATCGTAAATCCAGTCCTTCTCGTTCTC
GCTCTCCTCGACGAAAAATAAGCCCAGCCGCTTCACCACC
TTCCAGTCCACCCAATCATAAAGAAGAACCGAAGCGAGAA
CCAGACCAGTCAGAGAGCTCTAAACCAGAGCCACTCATTC
AGGAAGCTTCATCTACCAGTCTCACCCTCTCGCTCCACTA
GCCGTTCTCCACCTCCACCAGCCAAAAAGAACAGCAGTGT
CTCCCCGAGCCCTTCACCTAACAAGAACTCTGATGCAGAA
GGT

OTTDART00000055515 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000055515|OTTDARG00000038724|ZDB-GENE-040426-2789 srrm1|OTTDARP00000043541 srrm1-005 LG_ CU972452.10 Danio rerio protein_coding KNOWN, 803 bp
AGAAATGGACGCGGGTTTTTTCCGCGGCACCAGTGCGGAG
CAGGATAACCGCTTCAGCAACAAACACAAGAAACTCTTGA
AGCAGCTGAAGTTTGCAGAATGTCTGGAGAAAAAGGTGGA
TATGACCAAGGTCAACCTGGAAGTCATCAAGCCCTGGATC
ACCCAGCGTGTGACAGAGATACTTGGCTTCGAGGATGATG
TGGTCATTGAATTTGTCTTTAACCAGCTGGAGGAAAAGAA
TCCAGATGGAAAGATGATGCAGATTAATTTGACAGGTTTT
CTGAATGGAAAGAATGCTCGGGAGTTCATGAAAGACCTCT
GGCCACTGTTGTTAAGCGCCCAGGAGAACATTGCCGGTAT
CCCATCAGCCTTCCTGGAGCAGAAGAAAGAGGAGATCAAA
CAGAGACAGATTGAACAGGAGAAACTCGCCTCTCTAAAAA
AAGTAGATGAAGATAAAAGGGAGAAGGAGAACAAAGAAAG
AGCTCAGTCAAAAAGCCCTAAACGGAGAAAGTCTCGCTCC
CCTGTGAAGCGTGATCGTAAATCCAGTCCTTCTCGTTCTC
GCTCTCCTCGACGAAAAATAAGCCCAGCCGCTTCACCACC
TTCCAGTCCACCCAATCATAAAGAAGAACCGAAGCGAGAA
CCAGACCAGTCAGAGAGCTCTAAACCAGAGCCACTCATTC
AGGAAGCTTCATCTACCAGTCTCACCCTCTCGCTCCACTA
GCCGTTCTCCACCTCCACCAGCCAAAAAGAACAGCAGTGT
CTCCCCGAGCCCTTCACCTAACAAGAACTCTGATGCAGAA
GGT

Related Transcripts

Transcripts related to srrm1

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	srrm1-203 (1) Ensembl	Ensembl	889 nt	Select Tool ZFIN BLAST
aberrant processed transcript	srrm1-205	Ensembl	803 nt
mRNA	srrm1-201 (1) Ensembl	Ensembl	3,480 nt	Select Tool ZFIN BLAST
mRNA	srrm1-204 (1) Ensembl	Ensembl	3,517 nt	Select Tool ZFIN BLAST
mRNA	srrm1-208 (1) Ensembl	Ensembl	848 nt	Select Tool ZFIN BLAST
ncRNA	ottdart00000055512 (1) Ensembl	Ensembl	567 nt	Select Tool ZFIN BLAST
ncRNA	ottdart00000055514 (1) Ensembl	Ensembl	612 nt	Select Tool ZFIN BLAST
ncRNA	ottdart00000055516 (1) Ensembl	Ensembl	834 nt	Select Tool ZFIN BLAST

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations