Transcript

srrm1-203

ID

ZDB-TSCRIPT-141209-2921

Name

srrm1-203 Nomenclature History

Previous Names

ottdart00000055513

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

srrm1 (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000148856 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|ENSDART00000148856.3|gene_biotype:protein_coding|ENSDARG00000001244.12 transcript_biotype:nonsense_mediated_decay gene_symbol:srrm1 cdna chromosome:GRCz11:17:25426113:25432736:1
GCCATATTGACACACGACAGAAATGGACGCGGGTTTTTTC
CGCGGCACCAGTGCGGAGCAGGATAACCGCTTCAGCAACA
AACACAAGAAACTCTTGAAGCAGCTGAAGTTTGCAGAATG
TCTGGAGAAAAAGGTGGATATGACCAAGGTCAACCTGGAA
GTCATCAAGCCCTGGATCACCCAGCGTGTGACAGAGATAC
TTGGCTTCGAGGATGATGTGGTCATTGAATTTGTCTTTAA
CCAGCTGGAGGAAAAGGCCTGAACCAATATGGATCTTATT
CCTTGCATCTGAAGTATAGCACCAACTCCTAATTAGATCT
CAACTGAGCCCAAAGTCTCTCTGAATCCAACTCTCCCTTG
ATGATGAGCTTTATTTTTTGAGAATCCAGATGGAAAGATG
ATGCAGATTAATTTGACAGGTTTTCTGAATGGAAAGAATG
CTCGGGAGTTCATGAAAGACCTCTGGCCACTGTTGTTAAG
CGCCCAGGAGAACATTGCCGGTATCCCATCAGCCTTCCTG
GAGCAGAAGAAAGAGGAGATCAAACAGAGACAGATTGAAC
AGGAGAAACTCGCCTCTCTAAAAAAAGTAGATGAAGATAA
AAGGGAGAAGGAGAACAAAGAAAGAGCTCAGTCAAAAAGC
CCTAAACGGAGAAAGTCTCGCTCCCCTGTGAAGCGTGATC
GTAAATCCAGTCCTTCTCGTTCTCGCTCTCCTCGACGAAA
AATAAGCCCAGCCGCTTCACCACCTTCCAGTCCACCCAAT
CATAAAGAAGAACCGAAGCGAGAACCAGACCAGTCAGAGA
GCTCTAAACCAGAGCCACTCATTCAGGAAGCTTCATCTAC
CAGTGATCTTGTGACTGAGATGAAGCCGGACTCAGTGTCA
GAGCCTGTG

OTTDART00000055513 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000055513|OTTDARG00000038724|ZDB-GENE-040426-2789 srrm1|OTTDARP00000043540 srrm1-003 LG_ CU972452.10 Danio rerio protein_coding KNOWN, 889 bp
GCCATATTGACACACGACAGAAATGGACGCGGGTTTTTTC
CGCGGCACCAGTGCGGAGCAGGATAACCGCTTCAGCAACA
AACACAAGAAACTCTTGAAGCAGCTGAAGTTTGCAGAATG
TCTGGAGAAAAAGGTGGATATGACCAAGGTCAACCTGGAA
GTCATCAAGCCCTGGATCACCCAGCGTGTGACAGAGATAC
TTGGCTTCGAGGATGATGTGGTCATTGAATTTGTCTTTAA
CCAGCTGGAGGAAAAGGCCTGAACCAATATGGATCTTATT
CCTTGCATCTGAAGTATAGCACCAACTCCTAATTAGATCT
CAACTGAGCCCAAAGTCTCTCTGAATCCAACTCTCCCTTG
ATGATGAGCTTTATTTTTTGAGAATCCAGATGGAAAGATG
ATGCAGATTAATTTGACAGGTTTTCTGAATGGAAAGAATG
CTCGGGAGTTCATGAAAGACCTCTGGCCACTGTTGTTAAG
CGCCCAGGAGAACATTGCCGGTATCCCATCAGCCTTCCTG
GAGCAGAAGAAAGAGGAGATCAAACAGAGACAGATTGAAC
AGGAGAAACTCGCCTCTCTAAAAAAAGTAGATGAAGATAA
AAGGGAGAAGGAGAACAAAGAAAGAGCTCAGTCAAAAAGC
CCTAAACGGAGAAAGTCTCGCTCCCCTGTGAAGCGTGATC
GTAAATCCAGTCCTTCTCGTTCTCGCTCTCCTCGACGAAA
AATAAGCCCAGCCGCTTCACCACCTTCCAGTCCACCCAAT
CATAAAGAAGAACCGAAGCGAGAACCAGACCAGTCAGAGA
GCTCTAAACCAGAGCCACTCATTCAGGAAGCTTCATCTAC
CAGTGATCTTGTGACTGAGATGAAGCCGGACTCAGTGTCA
GAGCCTGTG

Related Transcripts

Transcripts related to srrm1

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	srrm1-203	Ensembl	889 nt
aberrant processed transcript	srrm1-205 (1) Ensembl	Ensembl	803 nt	Select Tool
mRNA	srrm1-201 (1) Ensembl	Ensembl	3,480 nt	Select Tool
mRNA	srrm1-204 (1) Ensembl	Ensembl	3,517 nt	Select Tool
mRNA	srrm1-208 (1) Ensembl	Ensembl	848 nt	Select Tool
ncRNA	ottdart00000055512 (1) Ensembl	Ensembl	567 nt	Select Tool
ncRNA	ottdart00000055514 (1) Ensembl	Ensembl	612 nt	Select Tool
ncRNA	ottdart00000055516 (1) Ensembl	Ensembl	834 nt	Select Tool

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations