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ZIRC
ZFIN ID: ZDB-GENE-980528-2060
Gene Name: goosecoid
Gene Symbol: gsc
Sequence Ontology ID : SO:0001217

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Previous Names: etID102410.17 (1), etID5964.17 (1), ik:tdsubc_1c10 (1), ik:tdsubc_2g4 (1), ik:tdsubc_2h11, xx:tdsubc_1c10, xx:tdsubc_2g4, xx:tdsubc_2h11, zgc:101595, ZGSC

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(Including Attributions)
Location: Chr: 17 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have sequence-specific DNA binding activity. Involved in several processes, including neuroblast delamination; otic vesicle development; and regionalization. Predicted to localize to the  ...
GENE EXPRESSION
All Expression Data: 366 figures from 272 publications
Directly Submitted Expression Data: 8 figures (68 images) from Thisse et al., 2004 [MGC:101595]
  1 figure (1 image) from Thisse et al., 2005 [eu565]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa32143 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • x59 Indel Unknown Unknown TALEN
    Targeting reagents:
    DISEASE ASSOCIATED WITH gsc HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Short stature, auditory canal atresia, mandibular hypoplasia, skeletal abnormalities 602471
    DISEASE ASSOCIATED WITH gsc VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process anterior/posterior axis specification (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 13)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA gsc-201 (1) 1276
    gsc-202 (1) 1153
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS
    Addgene
    MARKER RELATIONSHIPS
    gsc Contained in: [BAC] DKEY-49F1 (1) (order this)
    gsc Encodes: [EST] eu565 (1), tdsubc_1c10 (1), tdsubc_2g4 (1), tdsubc_2h11 (1)
    [cDNA] MGC:101595 (1) (order this), MGC:192260 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131017 (1) 1252 bp
    Genomic GenBank:AL772209 (1) 202805 bp Blast at MegaBLAST
    Polypeptide UniProtKB:B2GRD3 (1) 240 aa
    Sequence Clusters UniGene:289 (1)
    Sequence Information (all 30)
    ORTHOLOGY for gsc ( Chr: 17 )
    CITATIONS (510)