Gene
col18a1a
- ID
- ZDB-GENE-030516-3
- Name
- collagen type XVIII alpha 1 chain a
- Symbol
- col18a1a Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 9 Mapping Details/Browsers
- Description
- Predicted to have extracellular matrix structural constituent. Involved in neural crest cell migration. Predicted to localize to extracellular matrix and extracellular space. Is expressed in several structures, including anterior neural keel; digestive system; nervous system; neural plate; and pronephros. Orthologous to human COL18A1 (collagen type XVIII alpha 1 chain).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 26 figures from 9 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- cb529 (20 images)
- cb371 (21 images)
Wild Type Expression Summary
- All Phenotype Data
- 1 Figure from Banerjee et al., 2013
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR010515 | Collagenase NC10/endostatin |
| Domain | IPR020067 | Frizzled domain |
| Domain | IPR035523 | Collagen alpha-1(XVIII) chain, frizzled domain |
| Domain | IPR045463 | Collagen type XV/XVIII, trimerization domain |
| Domain | IPR048287 | Thrombospondin-like, N-terminal domain |
| Family | IPR050149 | Collagen superfamily |
| Homologous_superfamily | IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily |
| Homologous_superfamily | IPR016186 | C-type lectin-like/link domain superfamily |
| Homologous_superfamily | IPR016187 | C-type lectin fold |
| Homologous_superfamily | IPR036790 | Frizzled cysteine-rich domain superfamily |
| Repeat | IPR008160 | Collagen triple helix repeat |
Domain Details Per Protein
| Protein | Length | Collagen alpha-1(XVIII) chain, frizzled domain | Collagenase NC10/endostatin | Collagen superfamily | Collagen triple helix repeat | Collagen type XV/XVIII, trimerization domain | Concanavalin A-like lectin/glucanase domain superfamily | C-type lectin fold | C-type lectin-like/link domain superfamily | Frizzled cysteine-rich domain superfamily | Frizzled domain | Thrombospondin-like, N-terminal domain |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
UniProtKB:A0A8M9QFI3
|
1437 | |||||||||||
|
UniProtKB:B0S8G5
|
1383 | |||||||||||
|
UniProtKB:A0A8M9PS88
|
1349 | |||||||||||
|
UniProtKB:A0A8M9QJR2
|
1645 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
col18a1a-201
(1)
|
Ensembl | 5,579 nt | ||
| mRNA |
col18a1a-202
(1)
|
Ensembl | 5,515 nt | ||
| mRNA |
col18a1a-203
(1)
|
Ensembl | 6,365 nt |
Interactions and Pathways
No data available
Plasmids
No data available