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General Information
ZIRC
ZFIN ID: ZDB-GENE-030516-3
Gene Name: collagen type XVIII alpha 1 chain a
Gene Symbol: col18a1a
Sequence Ontology ID : SO:0001217

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Previous Names: cb371 (1), col18a1, cb529 (1), fc96d06, sb:cb529 (1), wu:fb47h10, wu:fb77g12, wu:fc50f04, wu:fc96d06, wu:fk02h12

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(Including Attributions)
Location: Chr: 9 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have extracellular matrix structural constituent. Involved in neural crest cell migration. Predicted to localize to the extracellular matrix and extracellular space. Is expressed in  ...
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la026994Tg Transgenic Insertion Unknown Unknown DNA
la026995Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la026996Tg Transgenic Insertion Unknown Unknown DNA
    la029609Tg Transgenic Insertion Unknown Unknown DNA
    la029610Tg Transgenic Insertion Unknown Unknown DNA
    sa34722 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: Fig. 4 from Banerjee et al., 2013
    Observed in:
    DISEASE ASSOCIATED WITH col18a1a HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Knobloch syndrome, type 1 267750
    DISEASE ASSOCIATED WITH col18a1a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process neural crest cell migration (more)
    Cellular Component collagen trimer (more)
    Molecular Function extracellular matrix structural constituent (more)
    GO Terms (all 6)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA col18a1a-201 (1) 5579
    col18a1a-202 (1) 5515
    col18a1a-203 (1) 6365
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM col18a1a No data available
    MARKER RELATIONSHIPS
    col18a1a Contained in: [BAC] DKEY-237E16 (1) (order this), DKEYP-30E7 (1)
    col18a1a Encodes: [EST] cb371 (1) (order this), cb529 (2) (order this), fb47h10 (1), fb77g12 (1), fc50f04 (1) (order this), fc96d06, fk02h12
    [cDNA] MGC:195107 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001039630 (1) 4191 bp
    Genomic GenBank:BX927363 (1) 134994 bp
    Select Tool
    Polypeptide UniProtKB:B0S8G4 (1) 1645 aa
    Sequence Clusters UniGene:52833 (1)
    Sequence Information (all 49)
    ORTHOLOGY for col18a1a ( Chr: 9 )
    CITATIONS (37)