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ZIRC
ZFIN ID: ZDB-TSCRIPT-090929-11640
Transcript Name: col18a1a-202
Previous Name: col18a1-002

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Attribution

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(Including Attributions)
Transcript Type: mRNA
Annotation Status:
Strain: TU
Non Reference Strains:
Associated with Genes:
SEQUENCE
OTTDART00000029217 (1) [ Show ] (double-click sequence to select) [Download]
Select Analysis Tool
>tpe|OTTDART00000029217|OTTDARG00000022631|ZDB-GENE-030516-3 col18a1|OTTDARP00000023874 col18a1-002 LG_none BX927363.9,CT030212.9 Danio rerio protein_coding KNOWN, 5515 bp
ACTCTCATCAGCTGTTGCACCGGCGCGAGGATCTCCTCTC
TCTGAAGCGGGAAAGTTTCATCCGATTCCCAACAACAATC
CCATGTAGCTATCGGGACGGAGCAGTTTCACGAACTGAAA
TGGCAAGAAGGTGTCTCGCGGTTCTGGAGCGGTTCTTCTG
CCTCGTGTTGATCTTGTCTCCGGTTGCATTACAGCAGAGA
GAAGAAAGTGGAGTGTCGCTGTTGCAACTAATTGGCGATC
CTCCACCCAACGGCGTCTCCAAAGTCTTCGACCAAGCAAA
CAGTCCTGGATATGTGTTTGGACCAAGCTCAAATGTGGGT
CAGTCTGCTGCAGCCCACCTGCCCAATCCCTTCTACCGCG
ATTTCTCCCTCATCTTCAATATAAAACCCACATCCTCCAA
GCCTGGCGTGATCTTCTCCATCACTGACCCCACTCAGAAC
ATCATGTATGTTGGCGTGAAGCTGTCGGCGGTGGAAAGAG
GCAAACAGTCCATTATCTTCTACTACACCGAGCCTGATTC
GCAGAGCTCCTATGAGGCGGCCAGATTCTCTGTTTCCTCC
ATGTTGAACATATGGACGCGCTTTTCCATCAGCGTTTTGA
ACGAGCAGGTTTCTCTCTACTTTAACTGCGACTCGGATCC
TCAGGTTGTCAATTTCGAGCGCTCGCCTGATGATATGGAC
ATGGATGCTGGCGCTGGAGTGTTTGTGGGACATGCCAGTG
GAGCAGACCCGGATAAGTTTTTGGGTGTTATTGGTGATCT
GAGGGTGTCGAGAGACCCTGGGGCGGCTGAACGGCACTGT
GAAGAAGAGGAGGATGACTATGCAACAGAGGCATCAGGTG
ATTACGGAGCAAGTGGAGATGGAGAGCAGCCATCACCAGT
TCAGCCAACACCTCCATCATCTCGGCCAATCCAGCGGCCA
CCGGTGATTAGCAGGGATCCTATACAGCGGCCACCGGTGA
TTAGCAGGGAGCCTATACAGCAGACAGTTGCAAGAGGAGA
GAAGGGTGACAGAGGGGAGAAGGGTGCTAAAGGTGACAGG
GGTCTTGCTGGGCCAAAGGGTGATGTGGGGTCTGGATCAG
TGTCTGGTGGAGGATCAAAAGGAGACAAGGGCGTCCCAGG
AGAGAAAGGAATGAAGGGCACTTCTGGTTTTGGTTATCCT
GGATCTAAGGGTGACCGTGGCCCCCCTGGACCTCCAGGAC
CTCCGGGTCCCCAAGGGCCCAGTGCAGAGGTAGAGGTGCG
GGGCGATGGGTCAGTTGTGCAGAAAGTCACAGGACCAAGA
GGACCACCTGGACCCCAAGGACCCCCTGGTCCCCCTGGAC
CTGAAGGGGAGCCGGGTGACCCTGGTGAAGATGGAAAAGC
TGGCCAAGTTGGACCTTCTGGTTTTCCTGGAAATCCTGGG
AATCCTGGACCCAAAGGAGATAAGGGAGATCGAGGTGAAA
GTCAGCCAGGACCCCGTGGGCCGCCTGGTCCTCCCGGCCC
ACCAGGACCCTCCTCTGGCTTTGATAGACCTACGTTTGTG
GACATGGAGGGCTCTGGATTTGATATGGACAGTGTGCGGG
CAGTGCCTGGTTTGCCTGGTCCACCTGGTCCTCCTGGTCC
CCCTGGTCCCCCTGGCTCTGCATCTTCAGGCTCTGGTGGT
TTTGGGCCACCTGGTCCTCCTGGGCAAAATGGGGCGCCAG
GTCAGCCGGGACTTTCGGGTGTACCAGGTGCTGATGGAAA
ACCAGGCTTACCTGGTCCAAAAGGAGAGAAGGGTGATGCC
GGTGAGCTGGGCCTTCCTGGACCGGTGGGAGAGAAGGGTG
CCAAAGGTTCTTCTGGTCCCCCTGGCACCACTGGGATTGG
TGGGCCTGCTGGTCTTCCAGGACCAATTGGACCTATTGGA
CTTCCAGGACCACCTGGTCCTCCTGGACCAAGCTTTAATG
TTGGTTTTGATGACATGGAAGGTTCTGGTGTTCACTTCAG
TTCAGTACCTGGAGTAAGAGGACCAGTTGGAATCCCGGGG
CCACCTGGTGTCCCAGGGCCACAGGGTCAGCCTGGATTCC
CAGGGCTTCCTGGTGAGAAAGGCAGTTTAGGAGCTCAGGG
AAATGATGGTCTTCCTGGTGCAGATGGCTTCCCTGGACCA
CAGGGACCAAAGGGCGACAAAGGAGAGCGAGGCGACAGGG
GTGAACCTGGTCGAGATGGACATGGTCATCCAGGCCAACC
AGGCCCTCCTGGACCACCTGGACAGATTATTTATCGCTAC
TCTGAACATTATGATGAAGTTGGAGGAACGGGGGCTCAGG
GTGGTTCTGGTGTTCCTGGCCAAGCAGGATTCCCAGGCCC
AATGGGACCAAAGGGTGACAGAGGTGAGCCTGGTCTTCCA
GGCTATGACATTAAGGGGGAGAAAGGAGAACCTGGACTTA
TTCTTGGACCTGATGGAAATCCACTTTACCTTGGTGGATT
GACAGGACAGAAGGGTGAGAGAGGTATTTCTGGACCAGTC
GGACCTCCTGGTCCAGCAGGACCTCCTGGTGCAAAAGGTG
AATTCGGAATGCCAGGCAGACCTGGTCGTCCAGGTGTGAA
CGGATATAAAGGAGAGAAGGGAGAGCCAAGTTCAGGCTCT
GGATATGGTTACCCGGGTCCCCCTGGTCCCCCAGGACCCC
CTGGTCCCCCCGGACCCGCTGTGCCCTTGGACAGATTTGG
CAGATATGAAGATTATGCAAGGCTCTATCCAGCTACGAAA
GGAGAGAAAGGAGACCAAGGAGCTCCTGGCATTCCCGGAT
CGCCAGGTTTTTCCACAAACTTTGATATATATTCACTCAA
GAATGAGATGAAGGGTGAGCGGGGAGAGTCTGGTCTTAAA
GGAGAGAAAGGAGAACCAGGAGGTGGATTTTATGACCCTC
GTTTTGGAGCTGTACAAGGACCACCAGGGAACCCAGGACC
TGCTGGACCTAAAGGAGACTCAATCAGAGGCCCACCTGGA
CCCCAGGGCCCACCAGGAACACCCGGGGTTGGTTATGATG
GTCGACCAGGTAATCCAGGACCTCCTGGACCACCTGGTCC
ACCAGGGTCCCCATCACTGCCAGGACCCTATAGGCCACCA
CTCAGTATTCCTGGACCTCCAGGTCCTCCTGGCCCACCTG
GAATTCCTGGCACTGGATCAGGGGTGACTGTCCTGAGGTC
TCATGACATAATGATTGCTACAGCACGCAGACAGACAGAA
GGGACTCTGATTTACATTCTGGACAGAAACGATCTCTACC
TCAGAGTTCGGGACGGTGTTAGACAAGTGATGCTTGGGGA
TTATAAACCTCTTTATGGAGAGCTGGACAATGAAGTGGCA
GCAGTCCAGCCACCCCCTGTTGTTCACTATTCCCAGGACC
ACACGGCTAACAATGGCGCAGAGCAGATTTCTCCACCACA
CCAGCCTATTGATTTCCCAACGAGAGAGCAGGAGAACAGA
AACCCCAACCCGCAACCTGACCCCCGATACCCGGATCCAC
GATACCCACCATACACTGACAACAGATACACCGATCCTGT
AGAGCCCAACATCAGATATCCTGTTCAACCCGAGAGGAAT
CCAATCACTCCAGCCCGCCGTCCTATCCCTCCTGTCAATC
AGCCAGGAGGCCACGCCCACACCCACACTTCCGGACCAGG
GTTGCATCTTATTGCTCTGAATTCTCCACAAGTGGGCAAC
ATGAGAGGCATTCGCGGGGCAGACTTCATGTGCTTCCAGC
AGGCACGGGCCGTTGGCATGAAGGGAACGTTCAGAGCCTT
CCTGTCCTCCAAACTCCAGGATCTCTACAGTATCGTCCGC
AGATCTGACAGAGAGACATTACCAATTGTTAACCTAAAGG
ATCAAGTCCTCTTCAGCAGCTGGGAGTCTCTCTTCAGTGA
CTCAGAGAGCAGGATGAAGGACAATGCACCCATCTACTCG
TTTGATGGCAGAGATGTCCTGAGGGACAGTGCCTGGCCAG
AGAAGATGATTTGGCACGGATCGGATGGCAGGGGTCACAG
GCAAACGGATAACTACTGCGAGACATGGAGGGCCGGAGAC
CGCGCTGTCACAGGCCTGGCCTCGTCCCTGCAGGCTGGTC
AACTCCTCCAGCAGACCTCCAGCAGCTGCTCCAGCTCCTA
CATCGTGCTGTGCATCGAGAACAGCTACATGACACAGTCC
AAGAAATAAAGCCGTCCGAAAGAGCCTTTGAAAACTCAAC
ACTTCAGTCATACAGGCCCAGATTTTGCTCCAGTAGATGC
CTGTATCTAATGAATGGAAATGTTAAAGAGTAAATTAAAC
TGAGTCTGCCTTAAGGAGAATTTGCCAGTCATCTATTCGC
CGTAACGCCAAAGGTTGAACGTGGAGGTGTTTGCTCTTTC
TCAGGGCACTGGCACATCTTTTTCAGGGGGTTAAACCAGA
GAAGTGAGGCCAACTGAGGCAGTTTTTTTTAACTGTATCC
ATATAAAATTTTGTATATGAATTGTTTGTCTTCTGTGTTG
TTGTTTTTTTTTTTTTGAAAAATGTCTTAATTGGTATATT
TAACCAATTTTAGCTATATTTTTTTGTGCAACCATTTTCC
TTCAAGGTTATGTTGGATATCGAGGAGCAAACCTTGACAT
AGTTTTAGAATTTGAAAAGAGAAAGTATTTATTTTGCAAT
AAAGAGAGCTAAAATATGATTTGAAACCACAAAGCATATT
TGTTTGCTATTTTAGCAAGCACATTTTTGCTACTTCAACA
GATGTAAGACTGAAGTGTAGCTTATAAATGGCTGCTCTCT
AAAAACCTCTAGTGGGCAAAGAGAAATGCCTTAAATAATT
CAACGCTTACCCCTCAAGAGTGTTTTGTACAAAACAAATG
ATTTGATCTGTTGCATCTATGGAATCACTGTGTTTTTTTT
TTCTATTGTGATTAATGTGAAATTTCATATGGACATCTGA
GTGTCATTATTTTACTCTTCTGGTTGATTCCAGAAGTTTC
CATGAGTAACGGGAATGGGAAGCTGAATAGTATTTGTAAC
AAATATTTTAAGGAAAAAAATTCTGTTACTAAAAAATAGT
GGTTACATGTCCCATAATTCAAAGGCATTGGTTGCATTCG
GTGCTTTTTGCTGATGAAACAGCTGCTGACAGTGTTGTTT
GGGAGAGACAGATGTGTTTTATGAAGACACTTTATCTTCT
ATCCATATGGAATTTCAGACACCTAATCCACTCTAGTGCT
ACTGATGTGTTCAGCACAACCCTGTGGGCTTCTAGTCTTT
TTTTCTTTCTTTCCTTTTGTACTAGTATGTGCTGCATCAT
GTCTCGGAGGCACTGACATTTTTTATTTTTCATTAGCCAC
AATAATTTTGGCACCACTTCTTGTGTATTAAAATCTATTT
CCTTAAAACCTACACATATCTTAGACTATGTTGTCTGTTC
ATGCACAATATTAACATATCGGATGTCGTTCACAAGCCAT
TTCATATCATGATTGTTTACTGTTCACTGACTGTTTACTA
AAAAAAAAAATAAAGGTACATTTTTCCTCTTCAAA

col18a1a TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA col18a1a-201 (1)    Ensembl 5579
col18a1a-202 5515
col18a1a-203 (1)    Ensembl 6365
SEGMENT (CLONE AND PROBE) RELATIONSHIPS
col18a1a-202 Contained in:

Genome Resources: Vega_Trans:OTTDART00000029217 (1),  Ensembl_Trans:ENSDART00000097295 (1)
PROTEIN PRODUCTS No links to external site
ZEBRAFISH SUPPORTING SEQUENCES
Type Accession # Length (bp/aa) Analysis
RNA GenBank:AJ967004 (1) 3283 bp
GenBank:CT692887 (1) 835 bp
GenBank:CT692859 (1) 785 bp
GenBank:EB847259 (1) 545 bp
CITATIONS (2)