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ZIRC
ZFIN ID: ZDB-GENE-030219-193
Gene Name: AF4/FMR2 family, member 3
Gene Symbol: aff3
Sequence Ontology ID : SO:0000704

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Previous Names: id:ibd5053 (1), si:dkey-19j7.2 (1)

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(Including Attributions)
Location: Chr: 9 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA-binding transcription factor activity and double-stranded DNA binding activity. Predicted to localize to the ELL-EAF complex. Orthologous to human AFF3 (AF4/FMR2 family member  ...
GENE EXPRESSION
All Expression Data: 3 figures from 2 publications
Directly Submitted Expression Data: 2 figures (4 images) from Kudoh et al., 2001 [ibd5053]
Wild-type Stages, Structures: Segmentation:5-9 somites (11.66h-14.0h) to Segmentation:10-13 somites (14.0h-16.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la029555Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa9758 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa13564 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21464 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21465 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21466 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21467 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa34615 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa34617 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa34618 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa34619 Point Mutation Unknown Missense, Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa45353 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH aff3 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH aff3 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component ELL-EAF complex (more)
    Molecular Function DNA-binding transcription factor activity (more)
    GO Terms (all 5)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR007797 (1)
  • Pfam:PF05110 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA aff3-201 (1) 540
    aff3-202 (1) 4342
    antisense ottdart00000059698 (1) 716
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM aff3 No data available
    MARKER RELATIONSHIPS
    aff3Contained in: [BAC] DKEY-19J7 (1) (order this)
    aff3Encodes: [EST] ibd5053 (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_009304671 (1)
    Genomic GenBank:BX649266 (1) 235135bp Blast at MegaBLAST
    Polypeptide UniProtKB:F1RA06 (1) 1193aa
    Sequence Clusters UniGene:122779 (1)
    Sequence Information (all 21)
    ORTHOLOGY for aff3 (Chr: 9)
    CITATIONS (18)