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General Information
ZIRC
ZFIN ID: ZDB-GENE-030131-9786
Gene Name: procollagen, type IX, alpha 2
Gene Symbol: col9a2
Sequence Ontology ID : SO:0001217

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Previous Names: cb343 (1), sb:cb343, wu:fa12h02, wu:fc93e05, zgc:100808

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(Including Attributions)
Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to localize to the basement membrane; collagen type IX trimer;  ...
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la020811Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la020812Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa8661 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa9812 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH col9a2 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    multiple epiphyseal dysplasia 2 Epiphyseal dysplasia, multiple, 2 600204
    ?Stickler syndrome, type V 614284
    DISEASE ASSOCIATED WITH col9a2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process extracellular matrix organization (more)
    Cellular Component collagen trimer (more)
    Molecular Function extracellular matrix structural constituent (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR008160 (1)
  • Pfam:PF01391 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA col9a2-002 (1) 720
    col9a2-003 (1) 823
    mRNA col9a2-201 (1) 3163
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM col9a2
    MARKER RELATIONSHIPS
    col9a2 Contained in: [BAC] CH211-194B5 (1) (order this)
    col9a2 Encodes: [EST] cb343 (1) (order this), fa12h02 (1), fc93e05 (1) (order this), IMAGE:7135988 (1) (order this)
    [cDNA] MGC:100808 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_212579 (1) 3178 bp
    Genomic GenBank:BX276085 (1) 202683 bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q1LXU2 (1) 691 aa
    Sequence Clusters UniGene:75252 (1)
    Sequence Information (all 19)
    ORTHOLOGY for col9a2 ( Chr: 19 )
    CITATIONS (41)