header logo image header logo text
Downloads Login
Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-001207-1
Gene Name: SPT5 homolog, DSIF elongation factor subunit
Gene Symbol: supt5h    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: Spt5, etID10129.15 (1), etID37101.15 (1), fb37g01, fb95e05, fog, foggy, wu:fb37g01 (1), wu:fb95e05 (1), wu:fc10f02

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 15 Mapping Details/Browsers
Description: Exhibits DNA binding activity. Involved in several processes, including generation of neurons; regulation of signal transduction; and regulation of transcription elongation from RNA polymerase II promoter. Localizes to the nucleus. Is expressed in brain and optic cup. Orthologous to human SUPT5H (SPT5 homolog, DSIF elongation factor subunit).
Genome Resources: Alliance (1),  Gene:64275 (1),  Ensembl(GRCz11):ENSDARG00000042724 (1)
GENE EXPRESSION
All Expression Data: 5 figures from 4 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:66413]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
fh20 Point Mutation Unknown Cryptic Splice Site
la012689Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • m806 Point Mutation Unknown Missense ENU
    sa13309 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa42529 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sk8 Point Mutation Unknown Cryptic Donor Splice Site, Exon Loss, Frameshift, Premature Stop
    Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-supt5h N/A 1
    MO2-supt5h N/A 1
    DISEASE ASSOCIATED WITH supt5h HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH supt5h VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of transcription by RNA polymerase II (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 18)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA supt5h-201 (1)    Ensembl 3868
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    Name Type Isotype Host Organism Assay Source Publications
    Ab1-supt5h polyclonal Rabbit 1
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM supt5h No data available
    MARKER RELATIONSHIPS
    supt5h Contained in: [BAC] DKEY-46I14 (1) (order this)
    supt5h Contains: [SNP] rs3728709 (1)
    supt5h Encodes: [EST] fb37g01 (1), fb95e05 (1), fc10f02
    [cDNA] MGC:66413 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131673 (1) 3816 bp
    Genomic GenBank:CR626887 (1) 198090 bp
    Select Tool
    Polypeptide UniProtKB:F1QD27 (1) 1084 aa
    Sequence Clusters UniGene:33072 (1)
    Sequence Information (all 27)
    ORTHOLOGY for supt5h ( Chr: 15 )
    CITATIONS (48)