FIGURE

Fig. 6

ID

ZDB-FIG-210612-15

Publication

Holler et al., 2021 - Spatio-temporal mRNA tracking in the early zebrafish embryo

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Fig. 6

3′UTR characteristics of vegetally localized genes.

a–c Comparison of sequence characteristics of expressed isoforms of vegetally localized to all genes. a Weighted 3′UTR (untranslated region) lengths: isoforms contribute according to their relative expression, mean(vegetal genes) = 1.06 kb, mean(background) = 0.6 kb, p value < 2.2 × 10⁻¹⁶ (two-sample Wilcoxon test). b Weighted lengths of coding sequences (CDS), mean(vegetal genes) = 2.78 kb, mean(background) = 2.42 kb, p value = 7.655 × 10⁻¹⁴ (two-sample Wilcoxon test). c FPKM (fragments per kilobase of transcript per million mapped reads) sum per gene ID, IDs with <10 FPKM were omitted. Mean expression of vegetal genes 64.1 FPKM, mean of background 37.4, p value < 2.2 × 10⁻¹⁶, (two-sample Wilcoxon test). d Results of the k-mer enrichment analysis of 3′UTRs of 216 expressed isoforms, zebrafish vegetally localized genes. Top seven motifs and logos. e Results of the k-mer enrichment analysis of the longest 3′UTR of vegetally localized genes in X. laevis and X. tropicalis, top six motifs, and their respective description based on previous publications.

Expression Data

Expression Detail

Antibody Labeling

Phenotype Data

Phenotype Detail

Acknowledgments

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