Gene

hoxb5b

ID
ZDB-GENE-000823-6
Name
homeobox B5b
Symbol
hoxb5b Nomenclature History
Previous Names
  • hoxa5
  • hoxzf54
  • etID309875.12 (1)
  • hoxb5-like
  • id:ibd2566 (1)
  • z-2
  • ZF-54
  • zgc:101134
Type
protein_coding_gene
Location
Chr: 12 Mapping Details/Browsers
Description
Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in brain development; cardioblast differentiation; and cell fate specification. Predicted to localize to nucleus. Is expressed in several structures, including mesoderm; nervous system; otic vesicle; pharyngeal arch; and pronephric duct. Orthologous to human HOXB5 (homeobox B5).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
18 figures from 13 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
3 figures from 2 publications
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With hoxb5b Human Ortholog
No data available
Associated With hoxb5b Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Conserved_site IPR001827 Homeobox protein, antennapedia type, conserved site
Conserved_site IPR017970 Homeobox, conserved site
Domain IPR001356 Homeodomain
Domain IPR020479 Homeodomain, metazoa
Family IPR017995 Homeobox protein, antennapedia type
Family IPR050296 Antennapedia-type homeobox
Homologous_superfamily IPR009057 Homedomain-like superfamily
Domain Details Per Protein
Protein Length Antennapedia-type homeobox Homedomain-like superfamily Homeobox, conserved site Homeobox protein, antennapedia type Homeobox protein, antennapedia type, conserved site Homeodomain Homeodomain, metazoa
UniProtKB:A0A0R4I9D0 276
UniProtKB:P09013 276
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA hoxb5b-201 (1) Ensembl 1,626 nt
mRNA ottdart00000001797 (1) Havana 1,356 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations