Gene

zgc:163098

ID

ZDB-GENE-070410-141

Name

zgc:163098

Symbol

zgc:163098 Nomenclature History

Previous Names

None

Type

protein_coding_gene

Location

Chr: 5 Mapping Details/Browsers

Description

Predicted to have RNA binding activity. Predicted to be involved in RNA processing. Orthologous to human U2SURP (U2 snRNP associated SURP domain containing).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With zgc:163098 Human Ortholog

No data available

Associated With zgc:163098 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000061	SWAP/Surp
Domain	IPR000504	RNA recognition motif domain
Domain	IPR006569	CID domain
Domain	IPR013170	mRNA splicing factor Cwf21 domain
Domain	IPR035009	SR140, RNA recognition motif
Domain	IPR047488	U2-associated protein SR140, cwf21 domain
Family	IPR051485	SR-related and CTD-associated factor
Homologous_superfamily	IPR008942	ENTH/VHS
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035967	SWAP/Surp superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	CID domain	ENTH/VHS	mRNA splicing factor Cwf21 domain	Nucleotide-binding alpha-beta plait domain superfamily	RNA-binding domain superfamily	RNA recognition motif domain	SR140, RNA recognition motif	SR-related and CTD-associated factor	SWAP/Surp	SWAP/Surp superfamily	U2-associated protein SR140, cwf21 domain
UniProtKB:A5PN19 InterPro	874
UniProtKB:A0A8M9Q2S3 InterPro	575

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	zgc:163098-201 (1) Ensembl	Ensembl	3,117 nt	Select Tool ZFIN BLAST
mRNA	zgc:163098-202 (1) Ensembl	Ensembl	1,104 nt	Select Tool ZFIN BLAST
mRNA	zgc:163098-203 (1) Ensembl	Ensembl	812 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations