ZFIN is now using GRCz12tu for Genomic Data
Gene
sec24c
- ID
- ZDB-GENE-030131-4487
- Name
- SEC24 homolog C, COPII coat complex component
- Symbol
- sec24c Nomenclature History
- Previous Names
-
- im:7145364
- wu:fd10d12
- Type
- protein_coding_gene
- Location
- Chr: 12 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable zinc ion binding activity. Acts upstream of or within cerebellum development; maintenance of lens transparency; and thigmotaxis. Predicted to be located in ER to Golgi transport vesicle membrane; cytosol; and endoplasmic reticulum membrane. Predicted to be part of COPII vesicle coat. Is expressed in gut and head. Orthologous to human SEC24C (SEC24 homolog C, COPII component).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 3 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7145364 (1 image)
Wild Type Expression Summary
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR006895 | Zinc finger, Sec23/Sec24-type |
| Domain | IPR006896 | Sec23/Sec24, trunk domain |
| Domain | IPR006900 | Sec23/Sec24, helical domain |
| Domain | IPR007123 | Gelsolin-like domain |
| Domain | IPR012990 | Sec23/Sec24, beta-sandwich |
| Domain | IPR041742 | Sec24-like, trunk domain |
| Family | IPR050550 | SEC23/SEC24 family, SEC24 subfamily |
| Homologous_superfamily | IPR029006 | ADF-H/Gelsolin-like domain superfamily |
| Homologous_superfamily | IPR036174 | Zinc finger, Sec23/Sec24-type superfamily |
| Homologous_superfamily | IPR036175 | Sec23/Sec24 helical domain superfamily |
| Homologous_superfamily | IPR036180 | Gelsolin-like domain superfamily |
| Homologous_superfamily | IPR036465 | von Willebrand factor A-like domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | ADF-H/Gelsolin-like domain superfamily | Gelsolin-like domain | Gelsolin-like domain superfamily | Sec23/Sec24, beta-sandwich | SEC23/SEC24 family, SEC24 subfamily | Sec23/Sec24, helical domain | Sec23/Sec24 helical domain superfamily | Sec23/Sec24, trunk domain | Sec24-like, trunk domain | von Willebrand factor A-like domain superfamily | Zinc finger, Sec23/Sec24-type | Zinc finger, Sec23/Sec24-type superfamily |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A0R4IMX2 | InterPro | 1248 | ||||||||||||
| UniProtKB:A0A8M2B375 | InterPro | 1277 | ||||||||||||
| UniProtKB:A0A8M6Z9C2 | InterPro | 1291 | ||||||||||||
| UniProtKB:A0A0R4IAZ9 | InterPro | 1300 | ||||||||||||
| UniProtKB:A0A8M2B330 | InterPro | 1271 | ||||||||||||
| UniProtKB:A0AC58GW93 | InterPro | 1255 | ||||||||||||
| UniProtKB:A0ACD6B7B6 | InterPro | 1293 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
sec24c-202
(1)
|
Ensembl | 5,678 nt | ||
| mRNA |
sec24c-203
(1)
|
Ensembl | 4,239 nt | ||
| mRNA |
sec24c-204
(1)
|
Ensembl | 484 nt | ||
| ncRNA |
sec24c-004
(1)
|
Ensembl | 528 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers