Gene

clxn

ID

ZDB-GENE-040914-40

Name

calaxin

Symbol

clxn Nomenclature History

Previous Names

efcab1
im:6911536 (1)
si:ch211-173p18.9 (1)

Type

protein_coding_gene

Location

Chr: 19 Mapping Details/Browsers

Description

Predicted to have calcium ion binding activity. Orthologous to human EFCAB1 (EF-hand calcium binding domain 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:6911536 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 1 Figure from Sasaki et al., 2019
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With clxn Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
		Ciliary dyskinesia, primary, 53	620642

Associated With clxn Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Binding_site	IPR018247	EF-Hand 1, calcium-binding site
Domain	IPR002048	EF-hand domain
Family	IPR028846	Recoverin family
Homologous_superfamily	IPR011992	EF-hand domain pair

Domain Details Per Protein

Protein	Length	EF-Hand 1, calcium-binding site	EF-hand domain	EF-hand domain pair	Recoverin family
UniProtKB:Q1LWZ0 InterPro	210

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
aberrant processed transcript	efcab1-202 (1) Ensembl	Ensembl		602 nt	Select Tool
mRNA	efcab1-201 (1) Ensembl	Ensembl		771 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations