ZFIN Sequences for Gene: upf1

ZFIN ID: ZDB-GENE-040426-2836

ZFIN ID: ZDB-GENE-040426-2836

SEQUENCE INFORMATION

Gene Name:	UPF1 RNA helicase and ATPase
Gene Symbol:	upf1

SEQUENCE INFORMATION

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_213474 (1)	3920 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_005163640 (1)	5562 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:GFIL01042750 (1)	5767 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BC045353 (1)	3920 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:FM986817 (1)	3920 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AW171365 (1)	565 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AW174226 (1)	511 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AW279994 (1)	456 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AW280946 (1)	214 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:CU693375	195548 nt	Select Tool MegaBLAST Ensembl
	GenBank:CU693375 (2)	119137 nt	Select Tool MegaBLAST Ensembl
	GenBank:CR931779 (2)	95627 nt	Select Tool MegaBLAST Ensembl
	GenBank:JBMGRA010000002 (1)		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl
Polypeptide	UniProtKB:F1RCY6 (2)	1100 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:Q7ZVZ4 (1)	1100 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8M2BAV2 (1)	1099 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A8I7ZFH8 (1)		Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	RefSeq:NP_998639 (1)	1100 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_005163697 (1)	1099 aa	Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	GenPept:AAH45353 (1)	1100 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:CAX18770 (1)	1100 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:F1RCY6 (1)	1100 aa	Select Tool ZFIN BLAST NCBI BLAST

upf1 CONTAINED IN

Marker	Type	Accession #	Length (nt/aa)	Analysis
[BAC] CH211-59P9 (2)	Genomic	GenBank:CU693375	195548	Select Tool MegaBLAST Ensembl
[BAC] DKEY-251J8 (1)	Genomic	GenBank:CR931779	95627	Select Tool MegaBLAST Ensembl

upf1 ENCODES

Marker	Type	Accession #	Length (nt/aa)	Analysis
[CDNA] MGC:55472 (2)	RNA	GenBank:BC045353	3920	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
[EST] fi40f07	RNA	GenBank:AW171365	565	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:AW174226	511	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
[EST] fj48a01 (1)	RNA	GenBank:AW279994	456	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:AW280946	214	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT