ZFIN ID: ZDB-GENE-040426-2836
Gene Name: upf1 regulator of nonsense transcripts homolog (yeast)
Gene Symbol: upf1
Sequence Ontology ID : SO:0000704

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: rent1, wu:fi40f07, wu:fj48a01, zgc:55472 (1)

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Location: Chr: 2 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 4 figures from 3 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55472]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la028839Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa7535 Point Mutation Unknown Nonsynonymous ENU
    sa11856 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa39953 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: 4 figures from 3 publications
    Observed in:
    DISEASE ASSOCIATED WITH upf1 HUMAN ORTHOLOG No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process nuclear-transcribed mRNA catabolic process (more)
    Cellular Component cytoplasm (more)
    Molecular Function ATP binding (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR006935 (1)
  • InterPro:IPR018999 (1)
  • InterPro:IPR027417 (1)
  • Pfam:PF04851 (1)
  • Pfam:PF09416 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA upf1-001 (1) 3260
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM upf1 No data available
    MARKER RELATIONSHIPS
    upf1Contained in: [BAC] CH211-59P9 (1) (order this), DKEY-251J8 (1) (order this)
    upf1Encodes: [EST] fi40f07 (1), fj48a01 (1)
    [cDNA] MGC:55472 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_213474 (1) 3920bp
    Genomic GenBank:CU693375 (1) 195548bp
    Select Tool
    Polypeptide UniProtKB:F1RCY6 (1) 1100aa
    Sequence Clusters UniGene:96025 (1)
    Sequence Information (all 20)
    OTHER upf1 GENE PAGES
  • Alliance (1)
  • Gene:406783 (1)
  • VEGA:OTTDARG00000023966 (1)
  • Ensembl(GRCz10):ENSDARG00000016302 (1)
  • ORTHOLOGY for upf1 (Chr: 2)
    CITATIONS (28)