ZFIN Sequences for Gene: clstn1

ZFIN ID: ZDB-GENE-040426-1064

ZFIN ID: ZDB-GENE-040426-1064

SEQUENCE INFORMATION

Gene Name:	calsyntenin 1
Gene Symbol:	clstn1

SEQUENCE INFORMATION

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001077784 (1)	3637 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:NM_201011 (1)	1762 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_005162269 (1)	6427 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_009296877 (1)	3187 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RefSeq:XM_009296878 (1)	3166 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:GFIL01004239 (1)	6505 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BC127396 (1)	3647 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BC052116 (1)	1762 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BC142794 (1)	1083 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BI879949 (1)	612 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:BF937698 (1)	472 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AW777920 (1)	423 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	GenBank:AW778646 (1)	352 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:BX571850 (1)	236136 nt	Blast at MegaBLAST
	GenBank:CR391934 (2)	138981 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:A0A8M2B948 (1)	981 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A9F2UUN9 (2)	971 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:A0A9F2Y9R0 (2)	964 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	UniProtKB:F1R520 (1)	954 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
	RefSeq:NP_001071252 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_005162326 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_009295152 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	RefSeq:XP_009295153 (1)		Select Tool ZFIN BLAST NCBI BLAST UCSC BLAT Ensembl Protein Blast
	GenPept:AAI27397 (1)	954 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:AAH52116 (1)	317 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:AAI42795 (1)	101 aa	Select Tool ZFIN BLAST NCBI BLAST
	GenPept:F1R520 (1)		Select Tool ZFIN BLAST NCBI BLAST

clstn1 CONTAINED IN

Marker	Type	Accession #	Length (nt/aa)	Analysis
[BAC] DKEY-259L18 (1)	Genomic	GenBank:BX571850	236136	Blast at MegaBLAST
[BAC] DKEY-279E7 (1)	Genomic	GenBank:CR391934	138981	Select Tool MegaBLAST Ensembl

clstn1 ENCODES

Marker	Type	Accession #	Length (nt/aa)	Analysis
[CDNA] MGC:56528 (2)	RNA	GenBank:BC052116	1762	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
[CDNA] MGC:153744 (1)	RNA	GenBank:BC127396	3647	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
[CDNA] MGC:165444 (1)	RNA	GenBank:BC142794	1083	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	Polypeptide	GenPept:AAI42795	101	Select Tool ZFIN BLAST NCBI BLAST
[EST] fk52g02 (2)	RNA	GenBank:AW777920	423	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:AW778646	352	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
[EST] fm67g03 (1)	RNA	GenBank:BI879949	612	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	RNA	GenBank:BF937698	472	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT